Bioconductor-mirror/RiboProfiling: Ribosome Profiling Data Analysis: from BAM to Data Representation and Interpretation
Version 1.7.1

Starting with a BAM file, this package provides the necessary functions for quality assessment, read start position recalibration, the counting of reads on CDS, 3'UTR, and 5'UTR, plotting of count data: pairs, log fold-change, codon frequency and coverage assessment, principal component analysis on codon coverage.

Getting started

Package details

AuthorAlexandra Popa
Bioconductor views Alignment Coverage PrincipalComponent QualityControl RiboSeq Sequencing Software
MaintainerA. Popa <[email protected]>
LicenseGPL-3
Version1.7.1
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("Bioconductor-mirror/RiboProfiling")
Bioconductor-mirror/RiboProfiling documentation built on June 1, 2017, 1:05 a.m.