Man pages for Bioconductor-mirror/RiboProfiling
Ribosome Profiling Data Analysis: from BAM to Data Representation and Interpretation

aroundPromoterReturns the flank size around the TSS for the x % CDSs
cdsPosTranscPer transcript relative position of start and end codons for...
codonDataCtrlCodon frequency and coverage in ORFs on chromosome 1, for...
codonIndexCovCtrlThe read coverage for each codon in ORFs on chromosome 1, for...
codonInfoAssociates the read counts on codons with the codon type for...
codonPCAPCA graphs on codon coverage
countShiftReadsApply an offset on the read start along the transcript and...
countsPlotGraphs of sample read counts (quality assesment)
ctrlGAlignmentsRibosome profiling data on chr1 in human primary BJ...
histMatchLengthHistogram of match length distribution of reads.
orfRelativePosRelative position of the start and stop codon along the...
plotSummarizedCovPlots the summarized coverage in a specified range (e.g....
printPCAPlots the PCA scatterplots produced by codonPCA function.
readStartCovRead start coverage around the TSS on the predifined CDSs
readsToStartOrEndReads in GAlignments converted to either Read Start (5') or...
RiboProfilingRiboProfiling.
riboSeqFromBAMStarting from a BAM file path: quality plots, shift ribosome...
Bioconductor-mirror/RiboProfiling documentation built on June 1, 2017, 1:05 a.m.