API for Bioconductor-mirror/Ringo
R Investigation of ChIP-chip Oligoarrays

Global functions
Cher Man page
[,probeAnno,ANY,ANY,ANY-method Man page
[,probeAnno-method Man page
[<-,probeAnno,ANY,ANY,ANY-method Man page
[<-,probeAnno-method Man page
alongChromTicks Man page Source code
arrayImage Man page
arrayName Man page
arrayName,probeAnno-method Man page
arrayName<- Man page
arrayName<-,probeAnno,character-method Man page
as.data.frame.cherList Man page Source code
asExprSet Man page Source code
asExpressionSet Man page
autocor Man page Source code
autocorr Man page
autocorrelation Man page
cbind2,ExpressionSet,ExpressionSet-method Man page
cellType Man page
cellType,cher-method Man page
cellType<- Man page
cellType<-,cher,character-method Man page
cher Man page
cher-class Man page
cherByThreshold Man page Source code
cherList Man page
cherList-class Man page
cherPlot Man page
chersToBED Man page Source code
chipAlongChrom Man page Source code
chipAlongChrom1 Man page Source code
chipAlongChromOld Man page
chromosomeNames Man page
chromosomeNames,probeAnno-method Man page
clusters Man page Source code
coerce,environment,probeAnno-method Man page
compute.gc Man page Source code
computeRunningMedians Man page Source code
computeSlidingT Man page Source code
corPlot Man page Source code
corrPlot Man page
createProbeAnno Man page
exportCCData Man page Source code
exportCherList Man page Source code
extractProbeAnno Man page Source code
featureColors Man page Man page Source code
features2Probes Man page Source code
findChersOnSmoothed Man page Source code
ftr2xys Man page Source code
gccontent Man page
genome Man page
genome,probeAnno-method Man page
genome<- Man page
genome<-,probeAnno,character-method Man page
get,character,missing,probeAnno-method Man page
getFeats Man page Source code
getFeatures Man page
image,RGList-method Man page
image.RGList Man page
initialize,cher-method Man page
initialize,probeAnno-method Man page
ls,probeAnno,missing,missing,missing,missing-method Man page
merge.RGList Man page Source code
newCher Man page Source code
newVP Man page Source code
nimblegenScale Man page Source code
nonzero Man page
nonzero,dgCMatrix-method Man page
nonzero,matrix-method Man page
nonzero,matrix.csr-method Man page
nonzero-methods Man page
normalizeBetweenArraysVSN Man page Source code
nullUpperBound Man page
onAttach Source code
onLoad Source code
onUnload Source code
oneChannelVSN Man page Source code
pair2xys Man page Source code
panel.cor Man page Source code
panel.scatter Man page Source code
plot,ExpressionSet,probeAnno-method Man page
plot,cher,ExpressionSet-method Man page
plot,cher,missing-method Man page
plot,qop,ANY-method Man page
plot,qop-method Man page
plot.autocor.result Man page Source code
plot.cher Man page Source code
plotAlongChromLegend Man page Source code
plotAutocor Man page
plotBM Man page Source code
plotBinaryMatrix Man page
plotCher Man page
plotFeatures Source code
plotOneChIPSample Man page Source code
posToProbeAnno Man page Source code
posToProbeAnnoEnvironment Man page
preprocess Man page Source code
print.cher Source code
probeAnno Man page
probeAnno-class Man page
probeAnnoFromRGList Man page
probes Man page
probes,cher-method Man page
probes,cherList-method Man page
qop-class Man page
quantilesOverPositions Man page Source code
readNgIntensitiesTxt Man page Source code
readNimblegen Man page Source code
readNimblegenHeader Man page Source code
region.overlap Man page
regionOverlap Man page Source code
relateChers Man page Source code
relateChers2 Man page
show,cher-method Man page
show,probeAnno-method Man page
show,qop-method Man page
sigGOTable Man page Source code
sliding.meansd Man page Source code
sliding.quantile Man page Source code
slidingquantile Man page
splitAndSimplify Man page Source code
takeMeanOverGroups Man page Source code
twoGaussiansNull Man page Source code
update,cher-method Man page
upperBoundNull Man page Source code
validProbeAnno Man page Source code
validateProbeAnno Man page
Bioconductor-mirror/Ringo documentation built on June 1, 2017, 1:05 a.m.