Files in Bioconductor-mirror/Ringo
R Investigation of ChIP-chip Oligoarrays

DESCRIPTION
NAMESPACE
R/AllGenerics.R R/Class_cher.R R/Class_probeAnno.R R/arrayImage.R R/autocorr.R R/cerFinding.R R/chipAlongChrom.R R/chipAlongChrom1.R R/computeSlidingT.R R/corrPlot.R R/enrichedregion.R R/exportTracks.R R/mmeansd.R R/plotBinaryMatrix.R R/preprocess.R R/probeAnnoFunctions.R R/quantilesOverPositions.R R/readNimblegen.R R/regionoverlap.R R/runningMedian.R R/sigGOTable.R R/sparse.R R/twoGaussianNull.R R/upperBoundNull.R R/util.R R/zzz.R
inst/CITATION
inst/agilentData/H3K4Me3_Tc1Liver_sol1_mmChr17_part.txt
inst/agilentData/arrayDescriptionAMEXP1029_part.txt
inst/agilentData/mm9chr17.RData
inst/agilentData/targets.txt
inst/exData/MOD_2003-12-05_SUZ12_1in2.ndf
inst/exData/MOD_2003-12-05_SUZ12_1in2.pos
inst/exData/MOD_20551_PMT1_pair.txt
inst/exData/MOD_20742_PMT1_pair.txt
inst/exData/README.txt
inst/exData/exampleProbeAnno.rda
inst/exData/exampleX.rda
inst/exData/example_targets.txt
inst/exData/reportersInexactMatchesHg18.rda
inst/exData/spottypes.txt
inst/scripts/condenseBlatOutput.pl
inst/scripts/condenseExonerateOutput.pl
inst/scripts/condenseMUMmerOutput.pl
inst/scripts/convertSampleKeyTxt.R
inst/scripts/extractProbeSequenceFasta.pl
inst/scripts/graphChers2Transcripts.R inst/scripts/makeProbeAnno.R inst/scripts/mapReportersWithBiostrings.R inst/scripts/retrieveGenomicFeatureAnnotation.R man/Ringo-internal.Rd man/arrayImage.Rd man/asExprSet.Rd man/autocorr.Rd man/cherByThreshold.Rd man/cherClass.Rd man/chipAlongChrom.Rd man/chipAlongChromOld.Rd man/computeRunningMedians.Rd man/compute_gc.Rd man/compute_sliding_t.Rd man/corrPlot.Rd man/exportCherList.Rd man/extractProbeAnno.Rd man/features2Probes.Rd man/findChersOnSmoothed.Rd man/ftr2xys.Rd man/getFeats.Rd man/newCER.Rd man/nimblegenNorm.Rd man/nonzero.Rd man/plotAutocorr.Rd man/plotBM.Rd man/plot_cher.Rd man/posToProbeAnnoEnvironment.Rd man/preprocess.Rd man/probeAnnoClass.Rd man/qopS4.Rd man/quantilesOverPositions.Rd man/readNimblegen.Rd man/regionoverlap.Rd man/relateCERs.Rd man/sigGOTable.Rd man/sliding_meansd.Rd man/sliding_quantile.Rd man/twoGaussiansNull.Rd man/upperBoundNull.Rd man/validProbeAnno.Rd
src/mmeansd.cpp
src/mmedian.cpp
src/region_overlap.c
src/ringo.h
src/ringo_init.c
vignettes/Makefile
vignettes/Ringo-Bibliography.bib
vignettes/Ringo.Rnw
Bioconductor-mirror/Ringo documentation built on June 1, 2017, 1:05 a.m.