Bioconductor-mirror/Roleswitch: Infer miRNA-mRNA interactions using paired expression data from a single sample
Version 1.15.0

Infer Probabilities of MiRNA-mRNA Interaction Signature (ProMISe) using paired expression data from a single sample. Roleswitch operates in two phases by inferring the probability of mRNA (miRNA) being the targets ("targets") of miRNA (mRNA), taking into account the expression of all of the mRNAs (miRNAs) due to their potential competition for the same miRNA (mRNA). Due to dynamic miRNA repression in the cell, Roleswitch assumes that the total transcribed mRNA levels are higher than the observed (equilibrium) mRNA levels and iteratively updates the total transcription of each mRNA targets based on the above inference. NB: in the paper, we used ProMISe as both the model name and inferred score name.

Getting started

Package details

AuthorYue Li
Bioconductor views miRNA
MaintainerYue Li <[email protected]>
LicenseGPL-2
Version1.15.0
URL http://www.cs.utoronto.ca/~yueli/roleswitch.html
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("Bioconductor-mirror/Roleswitch")
Bioconductor-mirror/Roleswitch documentation built on June 1, 2017, 1:09 a.m.