API for Bioconductor-mirror/RpsiXML
R interface to PSI-MI 2.5 files

Global functions
"sourceDb<-"-methods Man page
"sourceId<-"-methods Man page
BIOGRID.PSIMI25 Man page
CORUM.PSIMI25 Man page
DIP.PSIMI25 Man page
HPRD.PSIMI25 Man page
INTACT.PSIMI25 Man page
MATRIXDB.PSIMI25 Man page
MINT.PSIMI25 Man page
MIPS.PSIMI25 Man page
MPACT.PSIMI25 Man page
XMLattributeValueByPath Source code
XMLvalueByPath Source code
abstract,psimi25GraphBase-method Man page
annotateComplexesWithInteractors Source code
attributesList Man page
attributesList,attributesListBase-method Man page
availableXrefs Man page
availableXrefs,list-method Man page
availableXrefs,psimi25InteractionEntry-method Man page
availableXrefs,psimi25Interactor-method Man page
availableXrefs-methods Man page
bait Man page
bait,psimi25Interaction-method Man page
buildPCHypergraph Man page Source code
complexEntry2graph Man page Source code
complexName Man page
complexName,psimi25Complex-method Man page
complexes Man page
complexes,psimi25ComplexEntry-method Man page
complexes,psimi25Hypergraph-method Man page
confidenceValue Man page
confidenceValue,psimi25Interaction-method Man page
eListHandler Man page Source code
edgeLabel Man page
edgeLabel,psimi25Hypergraph-method Man page
genBPGraph Source code Source code
getAbstractByPMID Man page Source code
getDesired Source code
getEntryBasePath Source code
getExperimentNodeSetPath Source code
getHorizontalSepLine Source code
getInteractionNodeSet Source code
getInteractionNodeSetPath Source code
getInteractionPubmedPath Source code
getInteractorNodeSet Source code
getPrimaryInteractorPath Source code
getReleaseDatePath Source code
getSecondaryInteractorPath Source code
getValueByMatchingMatrixColumn Source code
getXmlExperimentNodeSet Source code
graphConverter Man page Source code
hyperGraphConverter Man page Source code
hyperedgeNodes Man page
hyperedgeNodes,Hypergraph-method Man page
hyperedgeNodes,psimi25Hypergraph-method Man page
iListHandler Man page Source code
iValue,psimi25Attribute-method Man page
iValue<-,psimi25Attribute-method Man page
inhibitor Man page
inhibitor,psimi25Interaction-method Man page
initialize,Hypergraph-method Man page
initialize,psimi25Hypergraph-method Man page
interactionEntry2graph Man page Source code
interactionType Man page
interactionType,psimi25Interaction-method Man page
interactionType,psimi25InteractionElementType-method Man page
interactions Man page
interactions,psimi25InteractionEntry-method Man page
interactorInfo Man page
interactorInfo,list-method Man page
interactorInfo,psimi25ComplexEntry-method Man page
interactorInfo,psimi25Graph-method Man page
interactorInfo,psimi25Hypergraph-method Man page
interactorInfo,psimi25InteractionEntry-method Man page
interactorInfo-methods Man page
interactors Man page
interactors,interactorListBase-method Man page
interactors,psimi25ComplexEntry-method Man page
interactors,psimi25InteractionEntry-method Man page
interactors-methods Man page
interactors<- Man page
interactors<-,interactorListBase,NULL-method Man page
interactors<-,interactorListBase,list-method Man page
interactors<--methods Man page
isLengthOneAndNA Source code
list2Matrix Man page Source code
members Man page
members,psimi25Complex-method Man page
name,psimi25Attribute-method Man page
name<-,psimi25Attribute,ANY-method Man page
name<-,psimi25Attribute,character-method Man page
nameAc,psimi25Attribute-method Man page
nameAc<-,psimi25Attribute-method Man page
neutralComponent Man page
neutralComponent,psimi25Interaction-method Man page
nonNullXMLattributeValueByPath Source code
nonNullXMLvalueByPath Source code
null2na Man page Source code
numEdges,psimi25Hypergraph-method Man page
numInteractions Man page
numInteractions,psimi25InteractionEntry-method Man page
numInteractions-methods Man page
numInteractors Man page
numInteractors,interactorListBase-method Man page
numInteractors-methods Man page
organismName Man page
organismName,organismTaxIdAndName-method Man page
organismName,psimi25Hypergraph-method Man page
organismName,psimi25InteractionEntry-method Man page
organismName-methods Man page
organismName<- Man page
organismName<-,organismTaxIdAndName,character-method Man page
parsePsimi25Complex Man page Source code
parsePsimi25Interaction Man page Source code
parseReleaseDate Source code
parseXmlAttribute Source code
parseXmlAttributeNodeSet Source code
parseXmlAttributesListByPath Source code
parseXmlComplexNode Source code
parseXmlEntryInteractors Source code
parseXmlEntryNode Source code
parseXmlEntryNodeSet Source code
parseXmlExperimentNode Source code
parseXmlExperimentNodeSet Source code
parseXmlInteractionNode Source code
parseXmlInteractionNodeSet Source code
parseXmlInteractorNode Source code
parseXmlInteractorNodeSet Source code
participant Man page
participant,psimi25Interaction-method Man page
prey Man page
prey,psimi25Interaction-method Man page
printManyItems Source code
psimi25Attribute-class Man page
psimi25Complex-class Man page
psimi25ComplexEntry-class Man page
psimi25Experiment-class Man page
psimi25Graph-class Man page
psimi25Hypergraph-class Man page
psimi25Hypergraph2GraphNEL Man page Source code
psimi25Interaction-class Man page
psimi25InteractionEntry-class Man page
psimi25Interactor-class Man page
psimi25Source-class Man page
psimi25XML2Graph Man page Source code
pubmedID Man page
pubmedID,psimi25Interaction-method Man page
pubmedID,psimi25InteractionEntry-method Man page
quiteAsInteger Source code
releaseDate Man page
releaseDate,psimi25Entry-method Man page
releaseDate-methods Man page
removeHypergraphNAnode Source code
revInciMat Man page
revInciMat,matrix-method Man page
separateXMLDataByExpt Man page Source code
show,pattributesListBase-method Man page
show,psimi25Attribute-method Man page
show,psimi25AvailabilityType-method Man page
show,psimi25Complex-method Man page
show,psimi25ComplexEntry-method Man page
show,psimi25DbReferenceType-method Man page
show,psimi25Graph-method Man page
show,psimi25Hypergraph-method Man page
show,psimi25Interaction-method Man page
show,psimi25InteractionEntry-method Man page
show,psimi25Interactor-method Man page
show,psimi25NamesType-method Man page
showHorizontalSepLine Source code
showListWithoutNames Source code
sourceDb Man page
sourceDb,psimi25Source-method Man page
sourceDb,sourceDbAndId-method Man page
sourceDb-methods Man page
sourceDb<- Man page
sourceDb<-,sourceDbAndId,character-method Man page
sourceId Man page
sourceId,sourceDbAndId-method Man page
sourceId-methods Man page
sourceId<- Man page
sourceId<-,sourceDbAndId,character-method Man page
statusDisplay Source code
statusIndicator Source code
taxId Man page
taxId,organismTaxIdAndName-method Man page
taxId,psimi25InteractionEntry-method Man page
taxId-methods Man page
taxId<- Man page
taxId<-,organismTaxIdAndName,character-method Man page
translateID Man page
translateID,list-method Man page
translateID,psimi25Graph-method Man page
translateID,psimi25Hypergraph-method Man page
translateID,psimi25Interactor-method Man page
translateID-methods Man page
uniprot Man page
uniprot,psimi25Interactor-method Man page
uniprot,psimi25Source-method Man page
uniprot-methods Man page
validatePSIMI25 Man page Source code
value<-,psimi25Attribute-method Man page
xref Man page
xref,psimi25CommonNameRef-method Man page
xref,psimi25Interactor-method Man page
Bioconductor-mirror/RpsiXML documentation built on June 1, 2017, 1:09 a.m.