query are assigned transcript names and gene names
of structurally compatible features in
subject (see below).
If a feature in
query does not match any features in
subject, its geneName inherits from connected annotated features.
Feature matching is performed as follows: Query splice junctions are matched with identical subject splice junctions. Query splice sites are matched with splice sites implied by subject splice junctions. Query exon bins are matched with overlapping subject exons. Spliced boundaries of query exon bins must match spliced subject exon boundaries. Query exon bins cannot extend across spliced subject exon boundaries.
query with updated
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