Annotate splice variants in terms of canonical events.
The following events are considered:
two consecutive exons skipped
mutually exclusive exons
alternative 5' splice site
alternative 3' splice site
alternative first exon
alternative last exon
alternative start other than “AFE”
alternative end other than “ALE”
For events “SE” and “S2E”, suffixes “I” and “S” indicate inclusion and skipping, respectively. For event “RI” suffixes “E” and “R” indicate exclusion and retention, respectively. For events “A5SS” and “A3SS”, suffixes “P” and “D” indicate use of the proximal (intron-shortening) and distal (intron-lengthening) splice site, respectively.
All considered events are binary events defined by two alternative variants. A variant is annotated as a canonical event if it coincides with one of the two variants in the canonical event, and there is at least one variant in the same event that coincides with the second variant of the canonical event.
variants with added metadata column
“variantType” indicating canonical event(s)
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.