Integrated Analysis on two human genomic datasets

acgh.data | Array Comparative Genomic Hybridization data |

assemble.data | Assemble the data to run the integrated analysis |

chrom.table | Table with chromosome information |

expr.data | Expression data example |

getoverlappingregions | Get the overlapping regions between independent and dependent... |

impute.nas.by.surrounding | Impute NA's in array-CGH data |

integrated.analysis | Integrated analysis of dependent and indepedent microarray... |

link.metadata | Link a metadata annotation file to expression ID |

RESOURCERER.annotation.to.ID | Link RESOURCERER annotation file to expression ID |

samples | Samples for example data |

SIM-package | Statistical Integration of Microarrays |

sim.plot.overlapping.indep.dep.features | P-value plot and mean-zscore plots with indication of... |

sim.plot.pvals.on.genome | Plot the P-values in whole genome overview |

sim.plot.pvals.on.region | P-value histograms and P-values along the genome per region |

sim.plot.zoom.in | Zoom in on heatmap |

sim.plot.zscore.heatmap | Association heatmap from z-scores |

sim.update.chrom.table | Update the chromomosome table |

tabulate.pvals | Sums significant P-values for the analyzed regions |

tabulate.top.dep.features | Lists the P-values for the dependent features |

tabulate.top.indep.features | Lists the mean z-scores for the independent features |

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