Man pages for Bioconductor-mirror/SLGI
Synthetic Lethal Genetic Interaction

AtongSystematic genetic analysis with ordered arrays of yeast...
AtongFnDomainThe functional domains shared by the tested pairs in Tong et...
AtongPairData frame the pair of yeast gene tested in Tong et al. 2004.
BoekeIncidence matrix of Synthetic Lethal interaction from the...
byComplexEvaluate protein co-membership within cellular organizational...
comemberInRetrieve the biological complexes.
compareCompare observed data to expected in permutation models
congruenceCalculate congruence score between pairs of of genes sharing...
createSquareMatrixCreate a square matrix
domainDistFinds the number of gene sets for each shared domain
dSLAM.GPL1444dSLAM platform used for Synthetic Lethal screens in the Boeke...
essglistThe list of yeast essential genes
getInteractionCount genetic interactions within and between cellular...
getSharedDomainsFind domains shared by a given list of gene names.
getSharedInteractionCalculate the number of shared synthetic genetic interactions...
getTestedPairsFind interacting and non-interacting tested pairs from an...
getUniquePairsFind unique pairs from an genetic interaction matrix.
gi2005Genetic Interaction Data (EMAP) from the yeast early...
gi2007Synthetic Genetic Interaction data from Collins et al
gi2InteractomeReduce genetic interactions matrix
hyperGHypergeometric test
iSummarySummarize cellular organizational units sharing genetic...
modelSLGIPermutation model for assessing synthetic genetic...
normInteractionNormalize a matrix of biological interactions
plotGraphical method to represent the result of the modelSLGI .
SDLThe Association matrix for the synthetic dosage lethal...
seqMatcherAlignFunctions to do local alignment of two sequences using EMBOSS...
SGASystematic genetic analysis with ordered arrays of yeast...
SGD.SLInteraction data from the Saccharomyces Genome Database
sharedByFind the gene pairs that share a domain.
sharedIntList shared genetic interactions between genes
siResult-classA class for representing the result of the SLGI graph...
test2InteractSummarize genetic interactions within or between cellular...
TFmatTranscription Factor Binding Affinities
topInteractionExtract interacting biological complexes
twoWayTableGenerate two-way table for genetic interaction data
withinComplexSearch for protein co-membership within complexes.
Bioconductor-mirror/SLGI documentation built on June 1, 2017, 2:07 a.m.