API for Bioconductor-mirror/STAN
The Genomic STate ANnotation Package

Global functions
.HMM Man page
.HMMEmission Man page
.bdHMM Man page
DimNames Man page Source code
DirScore Man page Source code
Emission Man page Source code
EmissionParams Man page Source code
HMM Man page Source code
HMM-class Man page
HMMEmission Man page Source code
HMMEmission-class Man page
InitProb Man page Source code
LogLik Man page Source code
STAN-package Man page
StateNames Man page Source code
Transitions Man page Source code
[,HMM,ANY,ANY-method Man page
[,bdHMM,ANY,ANY-method Man page
bdHMM Man page Source code
bdHMM-class Man page
bdHMM_get_info Source code
bidirEqB2 Source code
bidirGetTransMat_fixed2 Source code
bidirObjective2 Source code
binarizeData Man page Source code
c2optimize Man page Source code
c2solnp2 Source code
call_dpoilog Man page Source code
changeParams Source code
checkEmissionTwins Source code
checkHMMParams Source code
checkParameters Source code
clusterMat Source code
data2Gviz Man page Source code
emissionRevOp Source code
eval_constr Source code
example Man page
fitHMM Man page Source code
flags Man page
getAvgSignal Man page Source code
getConstraints Source code
getDataType Source code
getDim Source code
getLogLik Man page Source code
getPosterior Man page Source code
getRevOperation Source code
getSizeFactors Man page Source code
getStateFlags Source code
getViterbi Man page Source code
initBdHMM Man page Source code
initHMM Man page Source code
initNB Source code
initPoiLog Source code
matchEmission2Data Source code
myQNBinom Source code
myQPoiLog Source code
observations Man page
optimizeNB Source code
optimizeNBInit Source code
optimizePoiLog Source code
optimizePoiLogInit Source code
pilot.hg19 Man page
prepareEmission Source code
reformatEmissionAfterFitting Source code
reorderbdHMMStates Source code
revOpMultiDim Source code
runningMean Man page Source code
trainRegions Man page
ucscGenes Man page
validHMM Source code
validHMMEmission Source code
validbdHMM Source code
viterbi2GRanges Man page Source code
viterbi2Gviz Man page Source code
yeastTF_SGDGenes Man page
yeastTF_databychrom_ex Man page
Bioconductor-mirror/STAN documentation built on Aug. 12, 2017, 5:12 p.m.