API for Bioconductor-mirror/SeqGSEA
Gene Set Enrichment Analysis (GSEA) of RNA-Seq Data: integrating differential expression and splicing

Global functions
DENBStat4GSEA Man page Source code
DENBStatPermut4GSEA Man page Source code
DENBTest Man page Source code
DEpermutePval Man page Source code
DEscore Man page
DEscore.perm Man page
DSpermute4GSEA Man page Source code
DSpermutePval Man page Source code
DSresultExonTable Man page Source code
DSresultGeneTable Man page Source code
DSscore Man page
DSscore.perm Man page
GSEAresultTable Man page Source code
GSEnrichAnalyze Man page Source code
GS_example Man page
RCS_example Man page
ReadCountSet Man page
ReadCountSet-class Man page
SeqGSEA Man page
SeqGSEA-package Man page
SeqGeneSet Man page
SeqGeneSet-class Man page
[,SeqGeneSet,numeric-method Man page
calES Man page Source code
calES.perm Man page Source code
calVar Source code
convertEnsembl2Symbol Man page Source code
convertSymbol2Ensembl Man page Source code
counts Man page
counts,ReadCountSet-method Man page
counts-methods Man page
counts<-,ReadCountSet,matrix-method Man page
dphifun Source code
estiExonNBstat Man page Source code
estiExonProbVar Source code
estiGeneNBstat Man page Source code
estiPhi Source code
exonID Man page Source code
exonID<- Man page
exonTestability Man page Source code
geneID Man page Source code
geneID<- Man page
geneList Man page Source code
genePermuteScore Man page Source code
geneScore Man page Source code
geneSetDescs Man page Source code
geneSetNames Man page Source code
geneSetSize Man page Source code
geneTestability Man page Source code
genpermuteMat Man page Source code
getGeneCount Man page Source code
label Man page Source code
loadExonCountData Man page Source code
loadGenesets Man page Source code
newGeneSets Man page Source code
newReadCountSet Man page Source code
normES Man page Source code
normFactor Man page Source code
phifun Source code
plotES Man page Source code
plotGeneScore Man page Source code
plotSig Man page Source code
plotSigGeneSet Man page Source code
rankCombine Man page Source code
runDESeq Man page Source code
runSeqGSEA Man page Source code
scoreNormalization Man page Source code
show,SeqGeneSet-method Man page
signifES Man page Source code
size Man page Source code
sizeOfExcludedGS Source code
subsetByGenes Man page Source code
topDEGenes Man page Source code
topDSExons Man page Source code
topDSGenes Man page Source code
topGeneSets Man page Source code
writeScores Man page Source code
writeSigGeneSet Man page Source code
Bioconductor-mirror/SeqGSEA documentation built on June 1, 2017, 2:19 a.m.