API for Bioconductor-mirror/ShortRead
FASTQ input and manipulation

Global functions
!,SRFilterResult-method Man page
.QA-class Man page
.QA2-class Man page
.Roche-class Man page
.SRUtil-class Man page
.ShortReadBase-class Man page
.Solexa-class Man page
AlignedDataFrame Man page Source code
AlignedDataFrame-class Man page
AlignedRead Man page Source code
AlignedRead-class Man page
AlignedRead_QualityConstructor Source code
AlignedRead_subset Source code
AlignedRead_validity Source code
ArrayIntensity Man page Source code
ArrayIntensity-class Man page
BowtieQA Source code
BowtieQA-class Man page
Bowtie_AlignedDataFrame Source code
ExperimentPath Man page Source code
ExperimentPath-class Man page
FastqFile Man page Source code
FastqFile-class Man page
FastqFileList Man page
FastqFileList,ANY-method Man page
FastqFileList,character-method Man page
FastqFileList-class Man page
FastqFileReader-class Man page
FastqQA Man page Source code
FastqQA-class Man page
FastqQuality Man page
FastqQuality,BStringSet-method Man page
FastqQuality,character-method Man page
FastqQuality,missing-method Man page
FastqQuality-class Man page
FastqQuality_abc Source code
FastqQuality_af Source code
FastqQuality_ascore Source code
FastqQuality_character Source code
FastqQuality_missing Source code
FastqQuality_srduplicated Source code
FastqSampler Man page Source code
FastqSampler-class Man page
FastqSamplerList Man page
FastqSamplerList,ANY-method Man page
FastqSamplerList,character-method Man page
FastqSamplerList-class Man page
FastqStreamer Man page
FastqStreamer,ANY,IRanges-method Man page
FastqStreamer,ANY,missing-method Man page
FastqStreamer,ANY,numeric-method Man page
FastqStreamer-class Man page
FastqStreamerList Man page
FastqStreamerList,ANY-method Man page
FastqStreamerList,character-method Man page
FastqStreamerList-class Man page
IntegerQuality Man page Source code
IntegerQuality-class Man page
Intensity-class Man page
IntensityInfo-class Man page
IntensityMeasure-class Man page
Logic,SRFilterResult,SRFilterResult-method Man page
MAQMapQA Man page Source code
MAQMapQA-class Man page
MatrixQuality Man page Source code
MatrixQuality-class Man page
MatrixQuality_subset Source code
MatrixQuality_subset2 Source code
NumericQuality Man page Source code
NumericQuality-class Man page
QA Man page Source code
QA-class Man page Man page
QAAdapterContamination Man page Source code
QAAdapterContamination-class Man page
QACollate Man page
QACollate,QAFastqSource-method Man page
QACollate,missing-method Man page
QACollate-class Man page
QAData Man page Source code
QAData-class Man page
QAFastqSource Man page Source code
QAFastqSource-class Man page
QAFiltered Man page
QAFiltered-class Man page
QAFlagged Man page
QAFlagged-class Man page
QAFrequentSequence Man page Source code
QAFrequentSequence-class Man page
QANucleotideByCycle Man page
QANucleotideByCycle-class Man page
QANucleotideUse Man page
QANucleotideUse-class Man page
QAQualityByCycle Man page
QAQualityByCycle-class Man page
QAQualityUse Man page
QAQualityUse-class Man page
QAReadQuality Man page Source code
QAReadQuality-class Man page
QASequenceUse Man page
QASequenceUse-class Man page
QASource-class Man page
QASummary Source code
QASummary-class Man page
QASummaryFactory Source code
QualityScore-class Man page
QualityScore_subset Source code
QualityScore_subset2 Source code
RochePath Man page Source code
RochePath-class Man page
RocheSet Man page
RocheSet,RochePath-method Man page
RocheSet,character-method Man page
RocheSet-class Man page
RocheSet_RochePath Source code
RtaIntensity Man page Source code
RtaIntensity-class Man page
SFastqQuality Man page
SFastqQuality,BStringSet-method Man page
SFastqQuality,character-method Man page
SFastqQuality,missing-method Man page
SFastqQuality-class Man page
SFastqQuality_ascore Source code
SOAP_AlignedDataFrame Source code
SRError Man page Source code
SRError-class Man page
SRFilter-class Man page
SRFilterResult Man page Source code
SRFilterResult-class Man page
SRList Man page Source code
SRList-class Man page
SRList_show_class Source code
SRSet-class Man page
SRSet_validity Source code
SRVector Man page Source code
SRVector-class Man page
SRWarn Man page Source code
SRWarn-class Man page
ShortRead Man page
ShortRead,DNAStringSet,BStringSet-method Man page
ShortRead,DNAStringSet,missing-method Man page
ShortRead,missing,missing-method Man page
ShortRead-class Man page
ShortReadBase-package Man page
ShortReadFile-class Man page
ShortReadQ Man page
ShortReadQ,DNAStringSet,BStringSet,BStringSet-method Man page
ShortReadQ,DNAStringSet,BStringSet,missing-method Man page
ShortReadQ,DNAStringSet,QualityScore,BStringSet-method Man page
ShortReadQ,DNAStringSet,QualityScore,missing-method Man page
ShortReadQ,missing,missing,missing-method Man page
ShortReadQ-class Man page
ShortReadQQA Source code
ShortReadQQA-class Man page
ShortReadQ_subset Source code
ShortRead_subset Source code
ShortRead_validity Source code
Snapshot Man page
Snapshot,BamFileList,GRanges-method Man page
Snapshot,character,GRanges-method Man page
Snapshot,character,missing-method Man page
Snapshot-class Man page
SnapshotFunction Man page Source code
SnapshotFunction-class Man page
SnapshotFunctionList Man page
SnapshotFunctionList,ANY-method Man page
SnapshotFunctionList,SnapshotFunction-method Man page
SnapshotFunctionList-class Man page
SolexaExportQA Man page Source code
SolexaExportQA-class Man page
SolexaExport_AlignedDataFrame Source code
SolexaIntensity Man page Source code
SolexaIntensity-class Man page
SolexaIntensityInfo Man page Source code
SolexaIntensityInfo-class Man page
SolexaPath Man page Source code
SolexaPath-class Man page
SolexaRealignQA Source code
SolexaRealignQA-class Man page
SolexaSet Man page
SolexaSet,SolexaPath-method Man page
SolexaSet,character-method Man page
SolexaSet-class Man page
SolexaSet_SolexaPath Source code
SpTrellis Man page Source code
SpTrellis-class Man page
[,AlignedRead,ANY,ANY,ANY-method Man page
[,AlignedRead,ANY,ANY-method Man page
[,AlignedRead,ANY,missing,ANY-method Man page
[,AlignedRead,ANY,missing-method Man page
[,AlignedRead,missing,ANY,ANY-method Man page
[,AlignedRead,missing,ANY-method Man page
[,AlignedRead,missing,missing,ANY-method Man page
[,AlignedRead,missing,missing-method Man page
[,IntensityMeasure,ANY,ANY,ANY-method Man page
[,IntensityMeasure,ANY,ANY-method Man page
[,IntensityMeasure,ANY,missing,ANY-method Man page
[,IntensityMeasure,missing,ANY,ANY-method Man page
[,IntensityMeasure,missing,missing,ANY-method Man page
[,MatrixQuality,ANY,missing,ANY-method Man page
[,MatrixQuality,ANY,missing-method Man page
[,QualityScore,ANY,missing,ANY-method Man page
[,QualityScore,ANY,missing-method Man page
[,SRList,ANY,missing,ANY-method Man page
[,SRList,ANY,missing-method Man page
[,ShortRead,ANY,ANY,ANY-method Man page
[,ShortRead,ANY,ANY-method Man page
[,ShortRead,ANY,missing,ANY-method Man page
[,ShortRead,ANY,missing-method Man page
[,ShortRead,missing,ANY,ANY-method Man page
[,ShortRead,missing,ANY-method Man page
[,ShortRead,missing,missing,ANY-method Man page
[,ShortRead,missing,missing-method Man page
[,ShortReadQ,ANY,ANY,ANY-method Man page
[,ShortReadQ,ANY,ANY-method Man page
[,ShortReadQ,ANY,missing,ANY-method Man page
[,ShortReadQ,ANY,missing-method Man page
[,ShortReadQ,missing,ANY,ANY-method Man page
[,ShortReadQ,missing,ANY-method Man page
[,ShortReadQ,missing,missing,ANY-method Man page
[,ShortReadQ,missing,missing-method Man page
[,SolexaIntensity,ANY,ANY,ANY-method Man page
[,SolexaIntensity,ANY,ANY-method Man page
[,SolexaIntensity,ANY,missing,ANY-method Man page
[,SolexaIntensity,missing,ANY,ANY-method Man page
[,SolexaIntensity,missing,missing,ANY-method Man page
[<-,ShortReadQ,ANY,missing,ShortReadQ-method Man page
[[,ArrayIntensity,ANY,ANY-method Man page
[[,MatrixQuality,ANY,missing-method Man page
[[,QualityScore,ANY,missing-method Man page
[[,SRList,ANY,missing-method Man page
\%in\%,AlignedRead,RangesList-method Man page
abc_BStringSet Source code
abc_ShortRead Source code
abc_ShortReadQ Source code
accessors Man page
alignData Man page
alignDataFilter Man page Source code
alignQuality Man page
alignQualityFilter Man page Source code
alphabet,FastqQuality-method Man page
alphabetByCycle Man page Source code
alphabetByCycle,BStringSet-method Man page
alphabetByCycle,FastqQuality-method Man page
alphabetByCycle,ShortRead-method Man page
alphabetByCycle,ShortReadQ-method Man page
alphabetFrequency,FastqQuality-method Man page
alphabetScore Man page
alphabetScore,FastqQuality-method Man page
alphabetScore,PhredQuality-method Man page
alphabetScore,SFastqQuality-method Man page
alphabetScore,ShortReadQ-method Man page
analysisPath Man page
annTrack Man page
annTrack,Snapshot-method Man page
append,.ShortReadBase,.ShortReadBase-method Man page
append,AlignedDataFrame,AlignedDataFrame-method Man page
append,AlignedRead,AlignedRead-method Man page
append,MatrixQuality,MatrixQuality-method Man page
append,QualityScore,QualityScore-method Man page
append,ShortRead,ShortRead-method Man page
append,ShortReadQ,ShortReadQ-method Man page
append.factor Source code
arg_mismatch_type_err Source code
arg_mismatch_type_err2 Source code
arg_mismatch_value_err Source code
arg_missing_err Source code
atQuantile Source code
baseCallPath Man page
basePath Man page Source code
binReader Source code
bind Source code
c,SRFilter-method Man page
checkClass Source code
checkPath Source code
check_type_and_length Source code
chromosome Man page
chromosome,AlignedRead-method Man page
chromosomeFilter Man page Source code
clean Man page
clean,DNAStringSet-method Man page
clean,ShortRead-method Man page
close.ShortReadFile Man page Source code
coarse_annviewer Source code
coarse_coverage_reader Source code
coerce,AlignedRead,GAlignments-method Man page
coerce,AlignedRead,GRanges-method Man page
coerce,AlignedRead,GappedReads-method Man page
coerce,AlignedRead,RangedData-method Man page
coerce,AlignedRead,RangesList-method Man page
coerce,FastqQuality,PhredQuality-method Man page
coerce,FastqQuality,matrix-method Man page
coerce,FastqQuality,numeric-method Man page
coerce,PairwiseAlignments,AlignedRead-method Man page
coerce,SFastqQuality,SolexaQuality-method Man page
coerce,SFastqQuality,matrix-method Man page
coerce,SRFilter,FilterRules-method Man page
coerce,ShortReadQ,QualityScaledDNAStringSet-method Man page
colorkeyNames Source code
compose Man page Source code
countLines Man page Source code
coverage,AlignedRead-method Man page
coverage_as_dataframe Source code
coverage_viewer Source code
currentFunction Source code
dataPath Man page
defunct Man page
deprecated Man page
detail,.ShortReadBase-method Man page
detail,AlignedRead-method Man page
detail,ExperimentPath-method Man page
detail,QualityScore-method Man page
detail,RochePath-method Man page
detail,SRList-method Man page
detail,SRSet-method Man page
detail,SRVector-method Man page
detail,ShortRead-method Man page
detail,ShortReadQ-method Man page
detail,SolexaPath-method Man page
detail,SolexaSet-method Man page
detail_additionalPathSlots Source code
df2a Source code
dim,Intensity-method Man page
dim,MatrixQuality-method Man page
dustyFilter Man page Source code
dustyScore Man page
dustyScore,DNAStringSet-method Man page
dustyScore,ShortRead-method Man page
encoding,FastqQuality-method Man page
encoding,SFastqQuality-method Man page
experimentPath Man page Source code
experimentPath,SRSet-method Man page
fac Man page
fac,Snapshot-method Man page
file_names Source code
files Man page
files,Snapshot-method Man page
filter1 Source code
filterFastq Man page Source code
filterFastq_check_fnames Source code
filterUpdate Source code
fine_annviewer Source code
fine_coverage_reader Source code
flag Man page
flag,.QA2-method Man page
flag,QAFrequentSequence-method Man page
flag,QAReadQuality-method Man page
flag,QASource-method Man page
forward_obj Source code
forward_objq Source code
forward_x Source code
forward_xq Source code
freqSequences Source code
functions Man page
functions,Snapshot-method Man page
getAlphabetFrequency Source code
getData Source code
getTrellis Man page
getTrellis,Snapshot-method Man page
get_coarse_coverage Source code
get_fine_coverage Source code
htmlReadOccur Source code
htmlReadQuality Source code
html_NA Source code
html_img Source code
hwrite Source code
id Man page
id,ShortRead-method Man page
idFilter Man page Source code
ignore.strand Man page
ignore.strand,Snapshot-method Man page
imageAnalysisPath Man page
intensity Man page
laneDescription Man page
laneNames Man page
laneNames,AnnotatedDataFrame-method Man page
laneNames,SolexaSet-method Man page
lapply,SRList,ANY-method Man page
lapply,SRList-method Man page
left,SpTrellis-method Man page
length,MatrixQuality-method Man page
length,QualityScore-method Man page
length,SRList-method Man page
length,ShortRead-method Man page
limits Man page Source code
make_getter Source code
maq_reverse Source code
maqmap_file_list_error Source code
measurementError Man page Source code
multiFile_coverage_as_dataframe Source code
multicoarse_coverage_reader Source code
multicoverage_viewer Source code
multifine_coverage_reader Source code
nFilter Man page Source code
name Man page
name,SRFilter-method Man page
name,SRFilterResult-method Man page
nameAll Source code
names,SRList-method Man page
names<-,SRList,character-method Man page
narrow,FastqQuality-method Man page
narrow,MatrixQuality-method Man page
narrow,ShortRead-method Man page
narrow,ShortReadQ-method Man page
occurrenceFilter Man page Source code
occurrenceName Source code
open.ShortReadFile Man page Source code
pan Man page
pan,Snapshot-method Man page
phenoData,SRSet-method Man page
plotAlignQuality Source code
plotCycleBaseCall Source code
plotCycleQuality Source code
plotDepthOfCoverage Source code
plotMultipleAlignmentCount Source code
plotNucleotideCount Source code
plotReadCount Source code
plotReadOccurrences Source code
plotReadQuality Source code
plotTileCounts Source code
plotTileLocalCoords Source code
plotTileQualityScore Source code
polyn Man page Source code
polynFilter Man page Source code
position Man page
position,AlignedRead-method Man page
positionFilter Man page Source code
ppnCount Source code
qa Man page
qa,ShortReadQ-method Man page
qa,SolexaPath-method Man page
qa,character-method Man page
qa,list-method Man page
qa2 Man page
qa2,FastqSampler-method Man page
qa2,QAAdapterContamination-method Man page
qa2,QACollate-method Man page
qa2,QAFastqSource-method Man page
qa2,QAFrequentSequence-method Man page
qa2,QANucleotideByCycle-method Man page
qa2,QANucleotideUse-method Man page
qa2,QAQualityByCycle-method Man page
qa2,QAQualityUse-method Man page
qa2,QAReadQuality-method Man page
qa2,QASequenceUse-method Man page
qa2_do_collate1 Source code
qa_Bowtie Source code
qa_Bowtie_lane Source code
qa_MAQMap Source code
qa_MAQMap_lane Source code
qa_ShortReadQ Source code
qa_SolexaExport Source code
qa_SolexaExport_lane Source code
qa_SolexaPath Source code
qa_SolexaRealign Source code
qa_SolexaRealign_lane Source code
qa_Solexa_tileStats Source code
qa_adapterContamination Source code
qa_alphabetFrequency Source code
qa_character Source code
qa_depthOfCoverage Source code
qa_fastq Source code
qa_fastq_lane Source code
qa_lst_as_data_frame Source code
qa_perCycleBaseCall Source code
qa_perCycleQuality Source code
qa_qdensity Source code
qa_sampleKey Source code
qualPath Man page
rbind,.QA-method Man page
rbind,QASummary-method Man page
read454 Man page
read454,RochePath-method Man page
readAligned Man page
readAligned,BamFile-method Man page
readAligned,SolexaPath-method Man page
readAligned,SolexaSet-method Man page
readAligned,character-method Man page
readAligned_Bowtie Source code
readAligned_MaqMap Source code
readAligned_MaqMapOld Source code
readAligned_MaqMapview Source code
readAligned_Maq_ADF Source code
readAligned_SOAP Source code
readAligned_SolexaAlign Source code
readAligned_SolexaExport Source code
readAligned_SolexaPath Source code
readAligned_SolexaResult Source code
readAligned_SolexaSet Source code
readAligned_bam Source code
readAligned_character Source code
readBaseQuality Man page
readBaseQuality,RochePath-method Man page
readBaseQuality,SolexaPath-method Man page
readBaseQuality,character-method Man page
readBaseQuality_Solexa Source code
readBaseQuality_SolexaPath Source code
readBaseQuality_character Source code
readBfaToc Man page Source code
readCount Man page
readData Man page
readFasta Man page
readFasta,RochePath-method Man page
readFasta,SolexaPath-method Man page
readFasta,character-method Man page
readFastaQual Man page
readFastaQual,RochePath-method Man page
readFastaQual,character-method Man page
readFastaQual_RochePath Source code
readFastaQual_character Source code
readFasta_RochePath Source code
readFastq Man page
readFastq,FastqFile-method Man page
readFastq,SolexaPath-method Man page
readFastq,character-method Man page
readFastq_SolexaPath Source code
readIndex Man page
readIntensities Man page
readIntensities,SolexaPath-method Man page
readIntensities,character-method Man page
readIntensities_IparIntensity Source code
readIntensities_RtaIntensity Source code
readIntensities_SolexaIntensity Source code
readIntensities_SolexaPath Source code
readIntensities_character Source code
readIntensityInfo Man page Source code
readPath Man page
readPrb Man page Source code
readPrb,SolexaPath-method Man page
readPrb,character-method Man page
readPrb_IntegerEncoding Source code
readPrb_SolexaPath Source code
readPrb_array Source code
readPrb_character Source code
readPrb_quality Source code
readQseq Man page
readQseq,SolexaPath-method Man page
readQseq,character-method Man page
readQseq_DataFrame Source code
readQseq_ShortReadQ Source code
readQseq_character Source code
readQual Man page Source code
readQual,RochePath-method Man page
readQual,character-method Man page
readQual_RochePath Source code
readXStringColumns Man page Source code
read_cif_or_cnf Source code
read_cif_or_cnf_file Source code
read_csv_portion Source code
read_ipar_int_array Source code
reader Man page Source code
renew Man page
renew,.ShortReadBase-method Man page
renewable Man page
renewable,.ShortReadBase-method Man page
renewable,character-method Man page
renewable,missing-method Man page
renewable_of Source code
renewable_query Source code
report Man page Source code
report,ANY-method Man page
report,BowtieQA-method Man page
report,FastqQA-method Man page
report,MAQMapQA-method Man page
report,QA-method Man page
report,QAAdapterContamination-method Man page
report,QAFiltered-method Man page
report,QAFlagged-method Man page
report,QAFrequentSequence-method Man page
report,QANucleotideByCycle-method Man page
report,QANucleotideUse-method Man page
report,QAQualityByCycle-method Man page
report,QAQualityUse-method Man page
report,QAReadQuality-method Man page
report,QASequenceUse-method Man page
report,QASource-method Man page
report,SolexaExportQA-method Man page
report,SolexaPath-method Man page
report_any Source code
report_html Man page
report_html,BowtieQA-method Man page
report_html,FastqQA-method Man page
report_html,MAQMapQA-method Man page
report_html,ShortReadQQA-method Man page
report_html,SolexaExportQA-method Man page
report_html,SolexaRealignQA-method Man page
report_html_do Source code
report_pdf_do Source code
restore Man page
restore,SpTrellis-method Man page
reverse,FastqQuality-method Man page
reverse,ShortReadQ-method Man page
reverseComplement,ShortReadQ-method Man page
right,SpTrellis-method Man page
runNames Man page
runNames,RochePath-method Man page Man page
runNames_RochePath Source code
sampleNames_RochePath Source code
sapply,SRList-method Man page
scanPath Man page
show,.QA-method Man page
show,.ShortReadBase-method Man page
show,AlignedRead-method Man page
show,ExperimentPath-method Man page
show,FastqQuality-method Man page
show,Intensity-method Man page
show,IntensityMeasure-method Man page
show,NumericQuality-method Man page
show,QAAdapterContamination-method Man page
show,QACollate-method Man page
show,QAFastqSource-method Man page
show,QAFrequentSequence-method Man page
show,QAReadQuality-method Man page
show,QASummary-method Man page
show,RochePath-method Man page
show,SRFilter-method Man page
show,SRFilterResult-method Man page
show,SRList-method Man page
show,SRSet-method Man page
show,SRVector-method Man page
show,ShortRead-method Man page
show,Snapshot-method Man page
show,SnapshotFunction-method Man page
show,SolexaExportQA-method Man page
show,SolexaPath-method Man page
show,SolexaSet-method Man page
show,SpTrellis-method Man page
show_KoverA Source code
show_additionalPathSlots Source code
show_some Source code
solexaPath Man page
sourcePath Man page
spViewPerFeature Man page Source code
srFilter Man page
srFilter,SRFilter-method Man page
srFilter,function-method Man page
srFilter,missing-method Man page
srPath Source code
srValidity Source code
srapply Man page
srdistance Man page Source code
srdistance,DNAStringSet,DNAString-method Man page
srdistance,DNAStringSet,DNAStringSet-method Man page
srdistance,DNAStringSet,character-method Man page
srdistance,ShortRead,ANY-method Man page
srdistanceDNA Source code
srdistanceFilter Man page Source code
srdistance_DNAStringSet_DNAString Source code
srdistance_DNAStringSet_DNAStringSet Source code
srdistance_DNAStringSet_character Source code
srdistance_ShortRead_ANY Source code
srduplicated Man page
srduplicated,AlignedRead-method Man page
srduplicated,FastqQuality-method Man page
srduplicated,ShortRead-method Man page
srduplicated,XStringSet-method Man page
sread Man page
sread,ShortRead-method Man page
srlist Man page
srorder Man page
srorder,AlignedRead-method Man page
srorder,FastqQuality-method Man page
srorder,ShortRead-method Man page
srorder,XStringSet-method Man page
srrank Man page
srrank,AlignedRead-method Man page
srrank,FastqQuality-method Man page
srrank,ShortRead-method Man page
srrank,XStringSet-method Man page
srsort Man page
srsort,FastqQuality-method Man page
srsort,ShortRead-method Man page
srsort,XStringSet-method Man page
stats Man page
stats,SRFilterResult-method Man page
strand,AlignedRead-method Man page
strandFilter Man page Source code
stringset_tables Source code
subset_err Source code
tables Man page
tables,ShortRead-method Man page
tables,XStringSet-method Man page
tileGeometry Source code
toStrand_Solexa Source code
togglefun Man page
togglefun,Snapshot-method Man page
togglep Man page
togglep,Snapshot-method Man page
togglez Man page
togglez,Snapshot-method Man page
trellis-class Man page
trimEnds Man page
trimEnds,FastqQuality-method Man page
trimEnds,ShortRead-method Man page
trimEnds,ShortReadQ-method Man page
trimEnds,XStringQuality-method Man page
trimEnds,XStringSet-method Man page
trimEnds,character-method Man page
trimLRPatterns,ShortRead-method Man page
trimTails Man page
trimTails,BStringSet-method Man page
trimTails,FastqQuality-method Man page
trimTails,ShortReadQ-method Man page
trimTails,XStringQuality-method Man page
trimTails,character-method Man page
trimTailw Man page
trimTailw,BStringSet-method Man page
trimTailw,FastqQuality-method Man page
trimTailw,ShortReadQ-method Man page
trimTailw,XStringQuality-method Man page
trimTailw,character-method Man page
undefined_method_err Source code
uniqueFilter Man page Source code
update_viewer Source code
vclass Man page
view Man page
view,Snapshot-method Man page
viewer Man page Source code
vrange Man page
vrange,Snapshot-method Man page
width,FastqQuality-method Man page
width,MatrixQuality-method Man page
width,NumericQuality-method Man page
width,QualityScore-method Man page
width,ShortRead-method Man page
writeFasta Man page
writeFasta,DNAStringSet-method Man page
writeFasta,ShortRead-method Man page
writeFastq Man page
writeFastq,ShortReadQ,FastqFile-method Man page
writeFastq,ShortReadQ,character-method Man page
yield Man page
yield,FastqFileReader-method Man page
yield,FastqSampler-method Man page
yield,FastqStreamer-method Man page
zi Man page
zi,SpTrellis-method Man page
zo Man page
zo,SpTrellis-method Man page
zoom Man page
zoom,Snapshot-method Man page
Bioconductor-mirror/ShortRead documentation built on June 1, 2017, 2:21 a.m.