Files in Bioconductor-mirror/Starr
Simple tiling array analysis of Affymetrix ChIP-chip data

DESCRIPTION
NAMESPACE
R/AhoCorasick.R R/Normalization.R R/RGlist2ExpresionSet.R R/backgd.sd.R R/cmarrt.ma.R R/cmarrt.peak.R R/correlationPlot.R R/declare.bound.R R/geneExpression.R R/getProfiles.R R/getProfilesByBase.R R/getProfilesMiddle.R R/heatmapplot.R R/list2matrix.R R/ma.stat.R R/makeProbeAnno.R R/makeSplines.R R/parseGffAnnotation.R R/plot.cmarrt.R R/plotProfiles.R R/profileplot.R R/quality_control.R R/readCelFile.R R/rm.small.peak.R R/sort.by.genomic.R R/whichIn.R R/writeGFF.R R/writeWIG.R
configure
configure.in
inst/extdata/Rpb3_IP2_chr1.cel
inst/extdata/Rpb3_IP_chr1.cel
inst/extdata/Scerevisiae_tlg_chr1.bpmap
inst/extdata/chrI.fa
inst/extdata/transcriptAnno.gff
inst/extdata/wt_IP_chr1.cel
man/RGlist2ExpressionSet.Rd man/backgd.sd.Rd man/bpmapToProbeAnno.Rd man/cmarrt.ma.Rd man/cmarrt.peak.Rd man/correlate.Rd man/correlationPlot.Rd man/declare.bound.Rd man/densityscatter.Rd man/expressionByFeature.Rd man/fill.Rd man/fillNA.Rd man/filterGenes.Rd man/getFeatures.Rd man/getIntensites.Rd man/getMeans.Rd man/getProfiles.Rd man/getProfilesByBase.Rd man/getRatio.Rd man/heatmapplot.Rd man/intersection.Rd man/kde2dplot.Rd man/list2matrix.Rd man/ma.stat.Rd man/makeProbeAnno.Rd man/makeSplines.Rd man/mapFeatures.Rd man/match_ac.Rd man/normalize.Probes.Rd man/plot.Density.Rd man/plot.boxes.Rd man/plot.cmarrt.Rd man/plot.gcBias.Rd man/plot.image.Rd man/plot.ma.Rd man/plot.posBias.Rd man/plot.ratioScatter.Rd man/plot.scatter.Rd man/plotProfiles.Rd man/profileplot.Rd man/rankPercentile.normalize.Rd man/read.gffAnno.Rd man/readCelFile.Rd man/remap.Rd man/rm.small.peak.Rd man/sameLength.Rd man/singleclusterplot.Rd man/sort.by.genomic.Rd man/substract.Rd man/whichIn.Rd man/windowxy.Rd man/writeGFF.Rd man/writePosFile.Rd man/writeWIG.Rd
src/Makevars
src/Makevars.in
src/Makevars.win
src/ahocorasick.c
src/collect.c
src/collect.h
src/fixed_gen_dist2.h
src/kseq.h
src/rm_small_peak.c
src/rm_small_peak.h
src/sort_by_genomic.c
src/sort_by_genomic.h
vignettes/Starr.Rnw
vignettes/bibliography.bib
Bioconductor-mirror/Starr documentation built on June 1, 2017, 2:27 a.m.