Man pages for Bioconductor-mirror/Sushi
Tools for visualizing genomics data

addlegendadds a legend to a Sushi plot
chromOffsetsdefines chromosome offsets for plotting multi chromosomal...
convertstrandinfoConverts strand info to 1 / -1
labelgenomeAdds genome coordinates to the x-axis of a Sushi plot
labelplotadds a letter and a title to a plot
maptocolorsmaps numeric vector to color palette
maptolwdmaps numeric vector to line widths
opaquemakes colors transparent (or opaque)
plotBedplots data stored in bed file format
plotBedgraphplots data stored in bed file format
plotBedpeplots data stored in bed file format
plotGenesplots gene structure or transcript structures
plotHicplots HiC interactio matrix
plotManhattanplots a Manhattan plot
sortChromsort chromosome files by chom name
Sushi_5C.bedpeSushi_5C.bedpe
Sushi_ChIAPET_pol2.bedpeSushi_ChIAPET_pol2.bedpe
Sushi_ChIPExo_CTCF.bedgraphSushi_ChIPExo_CTCF.bedgraph
Sushi_ChIPSeq_CTCF.bedgraphSushi_ChIPSeq_CTCF.bedgraph
Sushi_ChIPSeq_pol2.bedSushi_ChIPSeq_pol2.bed
Sushi_ChIPSeq_pol2.bedgraphSushi_ChIPSeq_pol2.bedgraph
Sushi_ChIPSeq_severalfactors.bedSushi_ChIPSeq_severalfactors.bed
SushiColorsGenerates a Sushi color palette
Sushi_DNaseI.bedgraphSushi_DNaseI.bedgraph
Sushi_genes.bedSushi_genes.bed
Sushi_GWAS.bedSushi_GWAS.bed
Sushi_hg18_genomeSushi_hg18_genome
Sushi_HiC.matrixSushi_HiC.matrix
Sushi_RNASeq_K562.bedgraphSushi_RNASeq_K562.bedgraph
Sushi_transcripts.bedSushi_transcripts.bed
zoomboxAdds a zoom box to a plot
zoomsregionAdds a zoom region to a plot
Bioconductor-mirror/Sushi documentation built on June 1, 2017, 2:29 a.m.