plotRTResd: Plot residuals for retention time prediction of two libraries

Description Usage Arguments Value Examples

View source: R/plotRTResd.R

Description

Plot residuals for retention time prediction of two libraries

Usage

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plotRTResd(dat1, dat2, nomod = FALSE)

Arguments

dat1

A data frame containing the first spectrum library

dat2

A data frame containing the second spectrum library

nomod

a logic value, representing if the modified peptides and its fragment ions will be removed. FALSE (default) means not removing.

Value

root mean square error of prediction residuals

Examples

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libfiles <- paste(system.file("files",package="SwathXtend"),
   c("Lib2.txt","Lib3.txt"),sep="/")
datBaseLib <- readLibFile(libfiles[1])
datExtLib <- readLibFile(libfiles[2])
plotRTResd(datBaseLib, datExtLib)

Bioconductor-mirror/SwathXtend documentation built on July 19, 2017, 8:41 a.m.