Bioconductor-mirror/SwimR: SwimR: A Suite of Analytical Tools for Quantification of C. elegans Swimming Behavior
Version 1.15.0

SwimR is an R-based suite that calculates, analyses, and plots the frequency of C. elegans swimming behavior over time. It places a particular emphasis on identifying paralysis and quantifying the kinetic elements of paralysis during swimming. Data is input to SwipR from a custom built program that fits a 5 point morphometric spine to videos of single worms swimming in a buffer called Worm Tracker.

Getting started

Package details

AuthorJing Wang <[email protected]>, Andrew Hardaway <[email protected]> and Bing Zhang <[email protected]>
Bioconductor views Visualization
MaintainerRandy Blakely <[email protected]>
LicenseLGPL-2
Version1.15.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("Bioconductor-mirror/SwimR")
Bioconductor-mirror/SwimR documentation built on June 1, 2017, 2:30 a.m.