Bioconductor-mirror/TFBSTools: Software Package for Transcription Factor Binding Site (TFBS) Analysis

TFBSTools is a package for the analysis and manipulation of transcription factor binding sites. It includes matrices conversion between Position Frequency Matirx (PFM), Position Weight Matirx (PWM) and Information Content Matrix (ICM). It can also scan putative TFBS from sequence/alignment, query JASPAR database and provides a wrapper of de novo motif discovery software.

Getting started

Package details

Bioconductor views Alignment GeneRegulation MotifAnnotation MotifDiscovery Transcription
Maintainer
LicenseGPL-2
Version1.15.4
URL https://github.com/ge11232002/TFBSTools
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("Bioconductor-mirror/TFBSTools")
Bioconductor-mirror/TFBSTools documentation built on Aug. 10, 2017, 10:45 a.m.