Files in Bioconductor-mirror/TFBSTools
Software Package for Transcription Factor Binding Site (TFBS) Analysis

DESCRIPTION
NAMESPACE
NEWS
R/AllClasses.r R/AllGenerics.r R/DB-methods.r R/DirichletMixture.r R/Enrichment.R R/ICM-methods.r R/IO.R R/JASPAR.R R/Motif-methods.r R/PFM-methods.r R/PWM-methods.r R/PairwiseAlignment-methods.r R/SiteSet-methods.r R/TFFM.R R/TFFMseqLogo.R R/Wrappers-methods.r R/XMatrix-methods.r R/XMatrixList-methods.r R/coercion-methods.r R/show-methods.r R/util-methods.r
data/MA0003.2.rda
data/MA0004.1.rda
data/MA0043.rda
data/MA0048.rda
inst/CITATION
inst/TFBSToolsBuild/build.r inst/TFBSToolsBuild/build2.R inst/TFBSToolsBuild/timing.R
inst/extdata/MA0001.1.pfm
inst/extdata/crp0.s
inst/extdata/hg19.danRer7.net.axt
inst/extdata/meme.output
inst/extdata/pfm_all_example.txt
inst/extdata/tffm_detailed.xml
inst/extdata/tffm_first_order.xml
inst/obsolete/PairwiseAlignmentTFBS-class.Rd
inst/obsolete/TFBSTools.Rnw
inst/obsolete/matrixAligner.c
man/IUPAC2Matrix.Rd man/MA0004.1.Rd man/MotifSet-class.Rd man/PFMSimilarity-methods.Rd man/PWMSimilarity-methods.Rd man/SitePairSet-class.Rd man/SitePairSetList-class.Rd man/SiteSet-class.Rd man/SiteSetList-class.Rd man/TFBSTools-package.Rd man/TFFM-class.Rd man/XMatrix-class.Rd man/XMatrixList-class.Rd man/calConservation-methods.Rd man/deleteMatrixHavingID-methods.Rd man/dmmEM-methods.Rd man/getEmissionProb.Rd man/getMatrixByID-methods.Rd man/getMatrixSet-methods.Rd man/getPosProb.Rd man/makeFlatFileDir.Rd man/parseMEMEOutput.Rd man/permuteMatrix-methods.Rd man/rPWMDmm-methods.Rd man/readJASPARMatrix.Rd man/readXMLTFFM.Rd man/runMEME-methods.Rd man/sampleRanges.Rd man/searchAln-methods.Rd man/searchPairBSgenome-methods.Rd man/searchSeq-methods.Rd man/seqLogo.Rd man/shannon.entropy.Rd man/toGRangesList-methods.Rd man/toICM-methods.Rd man/toPWM-methods.Rd man/writeGFF3-methods.Rd
src/Makevars
src/Makevars.common
src/Makevars.win
src/R_init_TFBSTools.c
src/TFBSTools.h
src/matrixAlignerDynamic.c
tests/testthat.R tests/testthat/test_Coercion.R tests/testthat/test_MEME.R tests/testthat/test_PFM.R tests/testthat/test_TFFM.R tests/testthat/test_XMatrix-class.R tests/testthat/test_searchSeq.R
vignettes/.gitignore
vignettes/TFBSTools.Rmd
vignettes/TFBSTools.bib
Bioconductor-mirror/TFBSTools documentation built on Aug. 10, 2017, 10:45 a.m.