tppDefaultTheme: Default ggplot theme for melting curve plots.

Description Usage Details Value Examples

View source: R/tppDefaultTheme.R

Description

Default theme to be passed to the gplots produced by the TPP package.

Usage

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Details

Internally, the theme is used as an argument for the function ggplot2::theme_set in order specify the appearance of the melting curve plots.

The specified plot properties include bold font and increased font size for axis labels and title, as well as a 90 degree angle for y axis labels.

Value

ggplot theme with default settings for melting plot appearance.

Examples

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# Import data:
data(hdacTR_smallExample)
tpptrData <- tpptrImport(configTable=hdacTR_config, data=hdacTR_data)
# Obtain template with default settings:
normRequirements <- tpptrDefaultNormReqs()
print(normRequirements)
# Relax filter on the 10th fold change column for 
# normalization set production:
normRequirements$fcRequirements[3,3] <- 0.25
# Perform normalization:
tpptrNorm <- tpptrNormalize(data=tpptrData, normReqs=)

Bioconductor-mirror/TPP documentation built on July 7, 2017, 11:01 p.m.