API for Bioconductor-mirror/TarSeqQC
TARgeted SEQuencing Experiment Quality Control

Global functions
# Man page
Object Man page
TEList Man page
TarSeqQC-package Man page
TargetExperiment Man page Source code
TargetExperiment-class Man page
TargetExperiment-methods Man page
TargetExperimentList Man page Source code
TargetExperimentList-class Man page
TargetExperimentList-method Man page
TargetExperimentList-methods Man page
addStatSummSheet Man page
addStatSummSheet,TargetExperiment-method Man page
addStatSummSheet-methods Man page
ampliPanel Man page
ampliPanel2 Man page
biasExploration Man page
biasExploration,TargetExperiment-method Man page
biasExploration-methods Man page
buildFeaturePanel Man page
buildFeaturePanel,TargetExperiment-method Man page
buildFeaturePanel-methods Man page
buildReport Man page
buildReport,TargetExperiment-method Man page
buildReport-methods Man page
checkBedFasta Man page Source code
checkBedFasta-methods Man page
getAttribute Man page
getAttribute,TargetExperiment-method Man page
getAttribute,TargetExperimentList-method Man page
getAttribute-methods Man page
getBamFile Man page
getBamFile,TargetExperiment-method Man page
getBamFile-methods Man page
getBedFile Man page
getBedFile,TargetExperiment-method Man page
getBedFile,TargetExperimentList-method Man page
getBedFile-methods Man page
getFastaFile Man page
getFastaFile,TargetExperiment-method Man page
getFastaFile-methods Man page
getFeature Man page
getFeature,TargetExperiment-method Man page
getFeature,TargetExperimentList-method Man page
getFeature-methods Man page
getFeaturePanel Man page
getFeaturePanel,TargetExperiment-method Man page
getFeaturePanel-methods Man page
getGenePanel Man page
getGenePanel,TargetExperiment-method Man page
getGenePanel-methods Man page
getLowCtsFeatures Man page
getLowCtsFeatures,TargetExperiment-method Man page
getLowCtsFeatures,TargetExperimentList-method Man page
getLowCtsFeatures-methods Man page
getOverlappedRegions Man page
getOverlappedRegions,TargetExperiment-method Man page
getPanels Man page
getPanels,TargetExperimentList-method Man page
getPileupP Man page
getPileupP,TargetExperiment-method Man page
getPileupP-methods Man page
getRegion Man page
getRegion,TargetExperiment-method Man page
getRegion,TargetExperimentList-method Man page
getRegion-methods Man page
getScanBamP Man page
getScanBamP,TargetExperiment-method Man page
getScanBamP-methods Man page
ggplotColours Man page
ggplotColours,TargetExperiment-method Man page
ggplotColours,TargetExperimentList-method Man page
ggplotColours-methods Man page
initialize Man page
initialize,TargetExperiment-method Man page
initialize,TargetExperimentList-method Man page
myCounts Man page
object Man page
pileupCounts Man page Source code
pileupCounts-methods Man page
plot Man page
plot,TargetExperiment Man page
plot,TargetExperimentList Man page
plot.TargetExperiment Man page Source code
plot.TargetExperimentList Man page Source code
plotAttrExpl Man page
plotAttrExpl,TargetExperiment-method Man page
plotAttrExpl,TargetExperimentList-method Man page
plotAttrExpl-methods Man page
plotAttrPerform Man page
plotAttrPerform,TargetExperiment-method Man page
plotAttrPerform-methods Man page
plotFeatPerform Man page
plotFeatPerform,TargetExperiment-method Man page
plotFeatPerform-methods Man page
plotFeature Man page
plotFeature,TargetExperiment-method Man page
plotFeature-methods Man page
plotGeneAttrPerFeat Man page
plotGeneAttrPerFeat,TargetExperiment-method Man page
plotGeneAttrPerFeat-methods Man page
plotGlobalAttrExpl Man page
plotGlobalAttrExpl,TargetExperimentList-method Man page
plotGlobalAttrExpl-methods Man page
plotInOutFeatures Man page
plotInOutFeatures,TargetExperiment-method Man page
plotInOutFeatures,data.frame-method Man page
plotMetaDataExpl Man page
plotMetaDataExpl,TargetExperiment-method Man page
plotMetaDataExpl-methods Man page
plotNtdPercentage Man page
plotNtdPercentage,TargetExperiment-method Man page
plotNtdPercentage-methods Man page
plotPoolPerformance Man page
plotPoolPerformance,TargetExperimentList-method Man page
plotPoolPerformance-methods Man page
plotRegion Man page
plotRegion,TargetExperiment-method Man page
plotRegion-methods Man page
print Man page
print,TargetExperiment-method Man page
print,TargetExperimentList-method Man page
readFrequencies Man page
readFrequencies,TargetExperiment-method Man page
readFrequencies-methods Man page
setAttribute<- Man page
setAttribute<-,TargetExperiment,character-method Man page
setAttribute<--methods Man page
setBamFile<- Man page
setBamFile<-,TargetExperiment,character-method Man page
setBedFile<- Man page
setBedFile<-,TargetExperiment,character-method Man page
setBedFile<--methods Man page
setFastaFile<- Man page
setFastaFile<-,TargetExperiment,character-method Man page
setFastaFile<--methods Man page
setFeature<- Man page
setFeature<-,TargetExperiment,character-method Man page
setFeature<-,TargetExperimentList,character-method Man page
setFeature<--methods Man page
setFeaturePanel<- Man page
setFeaturePanel<-,TargetExperiment,GRanges-method Man page
setFeaturePanel<--methods Man page
setGenePanel<- Man page
setGenePanel<-,TargetExperiment,GRanges-method Man page
setGenePanel<--methods Man page
setPileupP<- Man page
setPileupP<-,TargetExperiment,PileupParam-method Man page
setPileupP<--methods Man page
setScanBamP<- Man page
setScanBamP<-,TargetExperiment,ScanBamParam-method Man page
setScanBamP<--methods Man page
setsetBamFile<- Man page
setsetBamFile<--methods Man page
show Man page
show,TargetExperiment-method Man page
show,TargetExperimentList-method Man page
summarizePanel Man page
summarizePanel,TargetExperiment-method Man page
summarizePanel-methods Man page
summary Man page
summary(ampliPanel) Man page
summary,TargetExperiment-method Man page
summary,TargetExperimentList-method Man page
summaryFeatureLev Man page
summaryFeatureLev,TargetExperiment-method Man page
summaryFeatureLev-methods Man page
summaryGeneLev Man page
summaryGeneLev,TargetExperiment-method Man page
summaryGeneLev-methods Man page
summaryIntervals Man page
summaryIntervals,TargetExperiment-method Man page
summaryIntervals,TargetExperimentList-method Man page
summaryIntervals-methods Man page
Bioconductor-mirror/TarSeqQC documentation built on June 1, 2017, 3:22 a.m.