API for Bioconductor-mirror/TransView
Read density map construction and accession. Visualization of ChIPSeq and RNASeq data sets

Global functions
DensityContainer-class Man page
TVResults-class Man page
TransView Man page
TransView-package Man page
annotatePeaks Man page Source code
chromosomes Man page
chromosomes,DensityContainer-method Man page
class:DensityContainer Man page
class:TVResults Man page
cluster_order Man page
cluster_order,TVResults-method Man page
clusters Man page
clusters,TVResults-method Man page
collapsed Man page
collapsed,DensityContainer-method Man page
compression Man page
compression,DensityContainer-method Man page
data_pointer Man page
data_pointer,DensityContainer-method Man page
env Man page
env,DensityContainer-method Man page
ex_name Man page
ex_name,DensityContainer-method Man page
ex_name<- Man page
ex_name<-,DensityContainer-method Man page
filtered Man page
filtered,DensityContainer-method Man page
filtered_reads Man page
filtered_reads,DensityContainer-method Man page
fmapmass Man page
fmapmass,DensityContainer-method Man page
gcoverage Man page
gcoverage,DensityContainer-method Man page
gene2window Source code
gsize Man page
gsize,DensityContainer-method Man page
gtf2gr Man page Source code
histogram Man page
histogram,DensityContainer-method Man page
histogram-methods Man page
lcoverage Man page
lcoverage,DensityContainer-method Man page
lib_fname Source code
lmaxScore Man page
lmaxScore,DensityContainer-method Man page
lowqual Man page
lowqual,DensityContainer-method Man page
lsize Man page
lsize,DensityContainer-method Man page
macs2gr Man page Source code
maxScore Man page
maxScore,DensityContainer-method Man page
meltPeak Man page Source code
neg Man page
neg,DensityContainer-method Man page
nreads Man page
nreads,DensityContainer-method Man page
onAttach Source code
origin Man page
origin,DensityContainer-method Man page
paired Man page
paired,DensityContainer-method Man page
paired_reads Man page
paired_reads,DensityContainer-method Man page
parameters Man page
parameters,TVResults-method Man page
parseReads Man page Source code
peak2tss Man page Source code
plotTV Man page Source code
plotTVData Man page Source code
plotTVData,TVResults Man page
plotTVData,TVResults-method Man page
plotTVData-methods Man page
pos Man page
pos,DensityContainer-method Man page
prepare_flist Source code
proper_pairs Man page
proper_pairs,DensityContainer-method Man page
readthrough_pairs Man page
readthrough_pairs,DensityContainer-method Man page
rmTV Man page Source code
rmTV,DensityContainer-method Man page
rmTV-methods Man page
row_z_score Source code
s.dc Source code
scores_peaks Man page
scores_peaks,TVResults-method Man page
scores_rna Man page
scores_rna,TVResults-method Man page
setTV Source code
setTVResults Source code
show,DensityContainer-method Man page
show,TVResults-method Man page
size Man page
size,DensityContainer-method Man page
slice1 Man page Source code
slice1,DensityContainer,character,numeric,numeric-method Man page
slice1-methods Man page
slice1T Man page Source code
slice1T,DensityContainer,character-method Man page
slice1T-methods Man page
sliceN Man page Source code
sliceN,DensityContainer-method Man page
sliceN-methods Man page
sliceNT Man page Source code
sliceNT,DensityContainer,character-method Man page
sliceNT-methods Man page
spliced Man page
spliced,DensityContainer-method Man page
spliced<- Man page
spliced<-,DensityContainer-method Man page
strands Man page
strands,DensityContainer-method Man page
summaryTV Man page
summaryTV,TVResults-method Man page
test Source code
tvStats Man page Source code
tvStats,DensityContainer-method Man page
tvStats-methods Man page
Bioconductor-mirror/TransView documentation built on June 1, 2017, 3:25 a.m.