Files in Bioconductor-mirror/XDE
XDE: a Bayesian hierarchical model for cross-study analysis of differential gene expression

CHANGES
DESCRIPTION
NAMESPACE
NEWS
R/AllClasses.R R/AllGenerics.R R/RUpdates.R R/functions.R R/methods-ExpressionSet.R R/methods-ExpressionSetList.R R/methods-Parameters.R R/methods-XdeMcmc.R R/methods-XdeParameter.R R/methods-data.frame.R R/methods-matrix.R R/methods-mergeExpressionSet.R R/xde.R R/zzz.R data/.commands.R data/.createLogFiles.R
data/expressionSetList.RData
data/xmcmc.RData
inst/CITATION
inst/Test/DESCRIPTION
inst/Test/NAMESPACE
inst/Test/R/initializeParams.R inst/Test/R/zzz.R
inst/Test/man/Test-package.Rd
inst/Test/src/Cholesky.cpp
inst/Test/src/Cholesky.h
inst/Test/src/Matrix.h
inst/Test/src/Matrix_v2.cpp
inst/Test/src/Matrix_v2.h
inst/Test/src/Potential.h
inst/Test/src/PotentialA.h
inst/Test/src/PotentialB.h
inst/Test/src/PotentialDDelta.h
inst/Test/src/PotentialDDeltag.h
inst/Test/src/PotentialDelta.h
inst/Test/src/PotentialDeltag.h
inst/Test/src/PotentialFunction.h
inst/Test/src/PotentialNu.h
inst/Test/src/PotentialNug.h
inst/Test/src/PotentialPhi.h
inst/Test/src/PotentialPhiqg.h
inst/Test/src/PotentialR.h
inst/Test/src/PotentialRho.h
inst/Test/src/PotentialSigma2.h
inst/Test/src/PotentialSigma2qg.h
inst/Test/src/PotentialSum.h
inst/Test/src/PotentialTau2.h
inst/Test/src/PotentialX.h
inst/Test/src/PotentialXi.h
inst/Test/src/PotentialXqg.h
inst/Test/src/PotentialZero.h
inst/Test/src/Potential_v2.cpp
inst/Test/src/Potential_v2.h
inst/Test/src/Random.h
inst/Test/src/Random_v2.cpp
inst/Test/src/Random_v2.h
inst/Test/src/Report.h
inst/Test/src/ReportA.h
inst/Test/src/ReportAcceptance.h
inst/Test/src/ReportB.h
inst/Test/src/ReportC2.h
inst/Test/src/ReportDDelta.h
inst/Test/src/ReportDelta.h
inst/Test/src/ReportDiffexpressed.h
inst/Test/src/ReportGamma2.h
inst/Test/src/ReportL.h
inst/Test/src/ReportLambda.h
inst/Test/src/ReportNu.h
inst/Test/src/ReportPhi.h
inst/Test/src/ReportPotential.h
inst/Test/src/ReportProbDelta.h
inst/Test/src/ReportR.h
inst/Test/src/ReportRho.h
inst/Test/src/ReportSigma2.h
inst/Test/src/ReportT.h
inst/Test/src/ReportTau2R.h
inst/Test/src/ReportTau2Rho.h
inst/Test/src/ReportTheta.h
inst/Test/src/ReportXi.h
inst/Test/src/Rinterface_v2.cpp
inst/Test/src/Structure.cpp
inst/Test/src/Structure.h
inst/Test/src/Update.h
inst/Test/src/UpdateAMH.h
inst/Test/src/UpdateBMH.h
inst/Test/src/UpdateC2Gibbs.h
inst/Test/src/UpdateDeltaMH.h
inst/Test/src/UpdateGamma2Gibbs.h
inst/Test/src/UpdateLMH.h
inst/Test/src/UpdateLambdaMH.h
inst/Test/src/UpdateMultiplicativePositive.h
inst/Test/src/UpdatePhiMH.h
inst/Test/src/UpdateRC2MH.h
inst/Test/src/UpdateRMH.h
inst/Test/src/UpdateRhoGamma2MH.h
inst/Test/src/UpdateRhoMH.h
inst/Test/src/UpdateSigma2MH.h
inst/Test/src/UpdateTMH.h
inst/Test/src/UpdateTau2RDDeltaMH.h
inst/Test/src/UpdateTau2RMH.h
inst/Test/src/UpdateTau2RhoMH.h
inst/Test/src/UpdateTau2RhoNuMH.h
inst/Test/src/UpdateThetaMH.h
inst/Test/src/UpdateXiGibbs.h
inst/Test/src/Update_v2.cpp
inst/Test/src/Update_v2.h
inst/Test/src/Utility_v2.cpp
inst/Test/src/Utility_v2.h
inst/Test/src/diffExpressed_main.cpp
inst/Test/src/mainTestHyper_v2.cpp
inst/Test/vignettes/callC.R
inst/logFiles/BES.rda
inst/logFiles/a.log
inst/logFiles/b.log
inst/logFiles/c2.log
inst/logFiles/gamma2.log
inst/logFiles/l.log
inst/logFiles/lambda.log
inst/logFiles/postAvg.rda
inst/logFiles/r.log
inst/logFiles/rho.log
inst/logFiles/t.log
inst/logFiles/tau2R.log
inst/logFiles/tau2Rho.log
inst/logFiles/theta.log
inst/logFiles/xi.log
inst/scripts/ModelA_B.R inst/scripts/ModelC_D.R inst/scripts/ModelI_II.R inst/scripts/v2Interface.R
inst/unitTests/Makefile
man/ExpressionSetList-class.Rd man/ExpressionSetList-methods.Rd man/Parameters-class.Rd man/XdeMcmc-class.Rd man/XdeParameter-class.Rd man/burnin.Rd man/calculatePosteriorAvg.Rd man/empiricalStart.Rd man/expressionSetList.Rd man/firstMcmc.Rd man/geneCenter.Rd man/hyperparameters.Rd man/iterations.Rd man/lastMcmc.Rd man/output.Rd man/pairs.Rd man/posteriorAvg.Rd man/seed.Rd man/ssStatistic.Rd man/standardizeSamples.Rd man/studyCenter.Rd man/symbolsInteresting.Rd man/thin.Rd man/tuning.Rd man/updates.Rd man/xde.Rd man/xmcmc.Rd man/xsScores.Rd man/zeroNu.Rd
src/Cholesky.cpp
src/Cholesky.h
src/Makevars
src/Matrix.h
src/Matrix_v2.cpp
src/Matrix_v2.h
src/Potential.h
src/PotentialA.h
src/PotentialB.h
src/PotentialDDelta.h
src/PotentialDDeltag.h
src/PotentialDelta.h
src/PotentialDeltag.h
src/PotentialFunction.h
src/PotentialNu.h
src/PotentialNug.h
src/PotentialPhi.h
src/PotentialPhiqg.h
src/PotentialR.h
src/PotentialRho.h
src/PotentialSigma2.h
src/PotentialSigma2qg.h
src/PotentialSum.h
src/PotentialTau2.h
src/PotentialX.h
src/PotentialXi.h
src/PotentialXqg.h
src/PotentialZero.h
src/Potential_v2.cpp
src/Potential_v2.h
src/Random.h
src/Random_v2.cpp
src/Random_v2.h
src/Report.h
src/ReportA.h
src/ReportAcceptance.h
src/ReportB.h
src/ReportC2.h
src/ReportDDelta.h
src/ReportDelta.h
src/ReportDiffexpressed.h
src/ReportGamma2.h
src/ReportL.h
src/ReportLambda.h
src/ReportNu.h
src/ReportPhi.h
src/ReportPotential.h
src/ReportProbDelta.h
src/ReportR.h
src/ReportRho.h
src/ReportSigma2.h
src/ReportT.h
src/ReportTau2R.h
src/ReportTau2Rho.h
src/ReportTheta.h
src/ReportXi.h
src/Rinterface_v2.cpp
src/Structure.cpp
src/Structure.h
src/Update.h
src/UpdateAMH.h
src/UpdateBMH.h
src/UpdateC2Gibbs.h
src/UpdateDeltaMH.h
src/UpdateGamma2Gibbs.h
src/UpdateLMH.h
src/UpdateLambdaMH.h
src/UpdateMultiplicativePositive.h
src/UpdatePhiMH.h
src/UpdateRC2MH.h
src/UpdateRMH.h
src/UpdateRhoGamma2MH.h
src/UpdateRhoMH.h
src/UpdateSigma2MH.h
src/UpdateTMH.h
src/UpdateTau2RDDeltaMH.h
src/UpdateTau2RMH.h
src/UpdateTau2RhoMH.h
src/UpdateTau2RhoNuMH.h
src/UpdateThetaMH.h
src/UpdateXiGibbs.h
src/Update_v2.cpp
src/Update_v2.h
src/Utility_v2.cpp
src/Utility_v2.h
src/XDE.dll
src/diffExpressed_main.cpp
src/doc/xdeLIN.pdf
src/doc/xdeLIN.tex
tests/doRUnit.R
vignettes/XDE.Rnw
vignettes/XdeParameterClass.Rnw
vignettes/genomics.bib
Bioconductor-mirror/XDE documentation built on June 1, 2017, 3:29 a.m.