API for Bioconductor-mirror/aCGH
Classes and functions for Array Comparative Genomic Hybridization data.

Global functions
[.aCGH Man page
aCGH Man page
aCGH.process Man page Source code
aCGH.read.Sprocs Man page Source code
aCGH.test Man page Source code
as.eSet Man page
as.matrix.dist Man page
changeProp.func Man page Source code
changeProp.overall.func Man page Source code
clone.names Man page
clone.names<- Man page
clones.info Man page Source code
clones.info.ex Man page
clusterGenome Man page Source code
col.names.aCGH Man page
col.names<-.aCGH Man page
colnames.aCGH Man page
colnames<-.aCGH Man page
colorectal Man page
combine.func Man page Source code
computeSD.Samples Man page Source code
computeSD.func Man page Source code
corna Man page Source code
create.aCGH Man page Source code
create.resT Man page Source code
dim.aCGH Man page Source code
dotify.names Man page Source code
ex.acgh.hmm Man page Man page Man page
extract.clones.info Man page Source code
fga.func Man page Source code
find.genomic.events Man page Source code
find.hmm.states Man page Source code
findAber.func Man page Source code
findAmplif.func Man page Source code
findOutliers.func Man page Source code
findTrans.func Man page Source code
floorFunc Man page Source code
gainLoss Man page Source code
genomic.events Man page Source code
genomic.events<- Man page
heatmap Man page Source code
hmm Man page Source code
hmm.merged Man page Source code
hmm.merged<- Man page
hmm.run.func Man page Source code
hmm<- Man page
human.chrom.info.Jul03 Man page
human.chrom.info.May04 Man page
impute.HMM Man page Man page Source code
impute.lowess Man page Source code
is.aCGH Man page Source code
is.even Man page Source code
is.odd Man page Source code
lengthGain.na Man page Source code
lengthLoss.na Man page Source code
lengthNumFunc Man page Source code
log2.ratios Man page Source code
log2.ratios.ex Man page
log2.ratios.imputed Man page Source code
log2.ratios.imputed<- Man page
maPalette Man page Source code
maxdiff.func Man page Source code
maxna Man page Source code
mergeFunc Man page Source code
mergeHmmStates Man page Source code
mergeLevels Man page Source code
mincorr.func Man page Source code
minna Man page Source code
mt.maxT Man page
mt.minP Man page
ncol.aCGH Man page
nrow.aCGH Man page
num.chromosomes Man page Source code
num.clones Man page
num.samples Man page
pheno.type.ex Man page
phenotype Man page Source code
phenotype<- Man page
plot.aCGH Man page Source code
plotCGH.func Man page Source code
plotCGH.hmm.func Man page Source code
plotChrom Man page Source code
plotChrom.grey.samples.func Man page Source code
plotChrom.hmm.func Man page Source code
plotChrom.samples.func Man page Source code
plotFreqGivenStat Man page
plotFreqStat Man page Source code
plotFreqStatColors Man page Source code
plotFreqStatGrey Man page Source code
plotGene Man page Source code
plotGeneSign Man page Source code
plotGenome Man page Source code
plotHmmStates Man page Source code
plotHmmStatesNew Man page Source code
plotSummaryProfile Man page Source code
plotValChrom Man page Source code
plotValGenome Man page Source code
plotfreq.givenstat.final.colors.func Man page Source code
plotfreq.stat.chrom.final.func Man page Source code
plotfreq.stat.final.func Man page Source code
plotfreqGivenStatFinalColors Man page
plotvalChrom.func Man page Source code
print.aCGH Man page Source code
prop.na Man page Source code
propGain.na Man page Source code
propLoss.na Man page Source code
propNumFunc Man page Source code
read.Sproc.files Man page Source code
row.names.aCGH Man page
row.names<-.aCGH Man page
rownames.aCGH Man page Source code
rownames<-.aCGH Man page
sample.names Man page Source code
sample.names<- Man page
sd.samples Man page Source code
sd.samples<- Man page
smoothData.func Man page
states.hmm.func Man page Source code
subset.hmm Man page Source code
subset.hmm.merged Man page Source code
summarize.clones Man page Source code
summary.aCGH Man page Source code
table.bac.func Man page Source code
threshold.func Man page Man page Source code
thresholdData.func Man page
Bioconductor-mirror/aCGH documentation built on June 1, 2017, 4:13 a.m.