Files in Bioconductor-mirror/affxparser
Affymetrix File Parsing SDK

.Rbuildignore
.Rinstignore
.covr.R
.gitignore
.make/Makefile
.travis.yml
DESCRIPTION
Makefile
NAMESPACE
NEWS
R/901.Dictionary.R R/902.CellCoordinatesAndIndices.R R/909.CellIndexMaps.R R/applyCdfBlocks.R R/applyCdfGroupFields.R R/applyCdfGroups.R R/arrangeCelFilesByChipType.R R/cdfAddBaseMmCounts.R R/cdfAddPlasqTypes.R R/cdfAddProbeOffsets.R R/cdfGetFields.R R/cdfGetGroups.R R/cdfGtypeCelToPQ.R R/cdfHeaderToCelHeader.R R/cdfMergeAlleles.R R/cdfMergeStrands.R R/cdfMergeToQuartets.R R/cdfOrderBy.R R/cdfOrderColumnsBy.R R/cdfSetDimension.R R/compareCdfs.R R/compareCels.R R/convertCdf.R R/convertCel.R R/copyCel.R R/createCel.R R/findCdf.R R/findFiles.R R/invertMap.R R/isCelFile.R R/parseDatHeaderString.R R/private.assertMap.R R/private.readCelHeaderV3.R R/private.readCelHeaderV4.R R/private.unwrapCelHeaderV4.R R/private.wrapCelHeaderV4.R R/readBpmap.R R/readBpmapHeader.R R/readBpmapSeqInfo.R R/readCcg.R R/readCcgHeader.R R/readCdf.R R/readCdfCellIndices.R R/readCdfDataFrame.R R/readCdfGroupNames.R R/readCdfHeader.R R/readCdfIsPm.R R/readCdfNbrOfCellsPerUnitGroup.R R/readCdfQc.R R/readCdfUnitNames.R R/readCdfUnits.R R/readCdfUnitsWriteMap.R R/readCel.R R/readCelHeader.R R/readCelIntensities.R R/readCelRectangle.R R/readCelUnits.R R/readChp.R R/readClf.R R/readPgf.R R/testWriteAndReadEmptyCdf.R R/testWriteAndReadEmptyCel.R R/tpmap2bpmap.R R/traverseCcg.R R/updateCel.R R/updateCelUnits.R R/writeCcg.R R/writeCdf.R R/writeCdf.private.R R/writeCdfHeader.R R/writeCdfQcUnits.R R/writeCdfUnits.R R/writeCelHeader.R R/writeTpmap.R R/zzz.R README.md
appveyor.yml
cleanup
incl/applyCdfGroups.Rex
incl/convertCdf.Rex
incl/convertCel.Rex
incl/createCel.Rex
incl/findCdf.Rex
incl/invertMap.Rex
incl/readCdfDataFrame.Rex
incl/readCdfNbrOfCellsPerUnitGroup.Rex
incl/readCdfUnits.Rex
incl/readCdfUnitsWriteMap.2.Rex
incl/readCdfUnitsWriteMap.Rex
incl/readCel.Rex
incl/readCelRectangle.Rex
incl/readCelUnits.Rex
incl/updateCel.Rex
incl/updateCelUnits.Rex
incl/writeCdf.Rex
inst/extras/easternEgg.gz
inst/info/Makefile
inst/info/changes2fusion.txt
inst/info/fusion_1.1.0_patches/AffxByteArray.cpp-patch
inst/info/fusion_1.1.0_patches/AffxConv.cpp-patch
inst/info/fusion_1.1.0_patches/AffymetrixBaseTypes.h-patch
inst/info/fusion_1.1.0_patches/CDFFileData.cpp-patch
inst/info/fusion_1.1.0_patches/affy-base-types.h-patch
inst/info/fusion_1.1.0_patches/gcc-4.7.cpp-patch
inst/info/fusion_1.1.2_patches/AffxByteArray.cpp-patch
inst/info/fusion_1.1.2_patches/AffxConv.cpp-patch
inst/info/fusion_1.1.2_patches/AffxConv.cpp-patch2
inst/info/fusion_1.1.2_patches/AffymetrixBaseTypes.h-patch
inst/info/fusion_1.1.2_patches/CDFFileData.cpp-patch
inst/info/fusion_1.1.2_patches/CELFileData.h-patch
inst/info/fusion_1.1.2_patches/CHPMultiDataData.cpp-patch
inst/info/fusion_1.1.2_patches/FileUtils.cpp-patch
inst/info/fusion_1.1.2_patches/Fs.cpp-patch
inst/info/fusion_1.1.2_patches/TsvFile.cpp-patch
inst/info/fusion_1.1.2_patches/Util.cpp-patch
inst/info/fusion_1.1.2_patches/Verbose.cpp-patch
inst/info/fusion_1.1.2_patches/affy-base-types.h-patch
inst/info/fusion_sdk_license.html
inst/testscripts/manualTest.R inst/testscripts/speedtest.R inst/testscripts/writeAndReadEmptyCdf.R inst/testscripts/writeAndReadEmptyCel.R man/1._Dictionary.Rd man/2._Cell_coordinates_and_cell_indices.Rd man/9._Advanced_-_Cell-index_maps_for_reading_and_writing.Rd man/affxparser-package.Rd man/applyCdfGroupFields.Rd man/applyCdfGroups.Rd man/arrangeCelFilesByChipType.Rd man/cdfAddBaseMmCounts.Rd man/cdfAddPlasqTypes.Rd man/cdfAddProbeOffsets.Rd man/cdfGetFields.Rd man/cdfGetGroups.Rd man/cdfGtypeCelToPQ.Rd man/cdfHeaderToCelHeader.Rd man/cdfMergeAlleles.Rd man/cdfMergeStrands.Rd man/cdfMergeToQuartets.Rd man/cdfOrderBy.Rd man/cdfOrderColumnsBy.Rd man/cdfSetDimension.Rd man/compareCdfs.Rd man/compareCels.Rd man/convertCdf.Rd man/convertCel.Rd man/copyCel.Rd man/createCel.Rd man/findCdf.Rd man/findFiles.Rd man/invertMap.Rd man/isCelFile.Rd man/parseDatHeaderString.Rd man/readBpmap.Rd man/readCcg.Rd man/readCcgHeader.Rd man/readCdf.Rd man/readCdfCellIndices.Rd man/readCdfDataFrame.Rd man/readCdfGroupNames.Rd man/readCdfHeader.Rd man/readCdfIsPm.Rd man/readCdfNbrOfCellsPerUnitGroup.Rd man/readCdfQc.Rd man/readCdfUnitNames.Rd man/readCdfUnits.Rd man/readCdfUnitsWriteMap.Rd man/readCel.Rd man/readCelHeader.Rd man/readCelIntensities.Rd man/readCelRectangle.Rd man/readCelUnits.Rd man/readChp.Rd man/readClf.Rd man/readClfEnv.Rd man/readClfHeader.Rd man/readPgf.Rd man/readPgfEnv.Rd man/readPgfHeader.Rd man/updateCel.Rd man/updateCelUnits.Rd man/writeCdf.Rd man/writeCdfHeader.Rd man/writeCdfQcUnits.Rd man/writeCdfUnits.Rd man/writeCelHeader.Rd man/writeTpmap.Rd
src/Makevars
src/Makevars.win
src/RAffxErrHandler.h
src/R_affx_bpmap_parser.cpp
src/R_affx_cdf_extras.cpp
src/R_affx_cdf_extras.h
src/R_affx_cdf_parser.cpp
src/R_affx_cel_parser.cpp
src/R_affx_chp_parser.cpp
src/R_affx_clf_pgf_parser.cpp
src/R_affx_constants.h
src/R_affx_test_bpmap_cmdline.cpp
src/R_affx_test_cdfwriter_cmdline.cpp
src/R_affx_test_celwriter_cmdline.cpp
src/R_affx_test_cmd_line.cpp
src/_mingw.h
src/_mingw_gcc463.h
src/_mingw_gcc493.h
src/fusion_sdk/calvin_files/array/src/ArrayAttributes.cpp
src/fusion_sdk/calvin_files/array/src/ArrayAttributes.h
src/fusion_sdk/calvin_files/array/src/ArrayAudit.cpp
src/fusion_sdk/calvin_files/array/src/ArrayAudit.h
src/fusion_sdk/calvin_files/array/src/ArrayAuditActionTypes.h
src/fusion_sdk/calvin_files/array/src/ArrayData.cpp
src/fusion_sdk/calvin_files/array/src/ArrayData.h
src/fusion_sdk/calvin_files/array/src/ArrayId.h
src/fusion_sdk/calvin_files/array/src/ArrayMedia.cpp
src/fusion_sdk/calvin_files/array/src/ArrayMedia.h
src/fusion_sdk/calvin_files/array/src/CreateStep.cpp
src/fusion_sdk/calvin_files/array/src/CreateStep.h
src/fusion_sdk/calvin_files/array/src/PATAssignment.cpp
src/fusion_sdk/calvin_files/array/src/PATAssignment.h
src/fusion_sdk/calvin_files/data/src/AllelePeaks.h
src/fusion_sdk/calvin_files/data/src/CDFData.cpp
src/fusion_sdk/calvin_files/data/src/CDFData.h
src/fusion_sdk/calvin_files/data/src/CDFDataTypes.h
src/fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp
src/fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.h
src/fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp
src/fusion_sdk/calvin_files/data/src/CDFProbeInformation.h
src/fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp
src/fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h
src/fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp
src/fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.h
src/fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp
src/fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.h
src/fusion_sdk/calvin_files/data/src/CELData.cpp
src/fusion_sdk/calvin_files/data/src/CELData.h
src/fusion_sdk/calvin_files/data/src/CHPBackgroundZone.cpp
src/fusion_sdk/calvin_files/data/src/CHPBackgroundZone.h
src/fusion_sdk/calvin_files/data/src/CHPData.cpp
src/fusion_sdk/calvin_files/data/src/CHPData.h
src/fusion_sdk/calvin_files/data/src/CHPExpressionEntry.cpp
src/fusion_sdk/calvin_files/data/src/CHPExpressionEntry.h
src/fusion_sdk/calvin_files/data/src/CHPGenotypeEntry.cpp
src/fusion_sdk/calvin_files/data/src/CHPGenotypeEntry.h
src/fusion_sdk/calvin_files/data/src/CHPMultiDataData.cpp
src/fusion_sdk/calvin_files/data/src/CHPMultiDataData.h
src/fusion_sdk/calvin_files/data/src/CHPQuantificationData.cpp
src/fusion_sdk/calvin_files/data/src/CHPQuantificationData.h
src/fusion_sdk/calvin_files/data/src/CHPQuantificationDetectionData.cpp
src/fusion_sdk/calvin_files/data/src/CHPQuantificationDetectionData.h
src/fusion_sdk/calvin_files/data/src/CHPReseqEntry.h
src/fusion_sdk/calvin_files/data/src/CHPTilingData.cpp
src/fusion_sdk/calvin_files/data/src/CHPTilingData.h
src/fusion_sdk/calvin_files/data/src/CHPTilingEntry.h
src/fusion_sdk/calvin_files/data/src/CHPUniversalEntry.cpp
src/fusion_sdk/calvin_files/data/src/CHPUniversalEntry.h
src/fusion_sdk/calvin_files/data/src/ChromosomeMultiDataSummaryData.h
src/fusion_sdk/calvin_files/data/src/ChromosomeSegmentMultiDataData.h
src/fusion_sdk/calvin_files/data/src/ColumnInfo.cpp
src/fusion_sdk/calvin_files/data/src/ColumnInfo.h
src/fusion_sdk/calvin_files/data/src/CytoGenotypeCallMultiDataData.h
src/fusion_sdk/calvin_files/data/src/DATData.cpp
src/fusion_sdk/calvin_files/data/src/DATData.h
src/fusion_sdk/calvin_files/data/src/DataException.cpp
src/fusion_sdk/calvin_files/data/src/DataException.h
src/fusion_sdk/calvin_files/data/src/DataGroup.cpp
src/fusion_sdk/calvin_files/data/src/DataGroup.h
src/fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp
src/fusion_sdk/calvin_files/data/src/DataGroupHeader.h
src/fusion_sdk/calvin_files/data/src/DataSet.cpp
src/fusion_sdk/calvin_files/data/src/DataSet.h
src/fusion_sdk/calvin_files/data/src/DataSetHeader.cpp
src/fusion_sdk/calvin_files/data/src/DataSetHeader.h
src/fusion_sdk/calvin_files/data/src/FamilialMultiDataData.h
src/fusion_sdk/calvin_files/data/src/FileHeader.cpp
src/fusion_sdk/calvin_files/data/src/FileHeader.h
src/fusion_sdk/calvin_files/data/src/GenericData.cpp
src/fusion_sdk/calvin_files/data/src/GenericData.h
src/fusion_sdk/calvin_files/data/src/GenericDataHeader.cpp
src/fusion_sdk/calvin_files/data/src/GenericDataHeader.h
src/fusion_sdk/calvin_files/data/src/GenericDataTypes.h
src/fusion_sdk/calvin_files/data/src/MarkerABSignals.h
src/fusion_sdk/calvin_files/data/src/MemMapFile.cpp
src/fusion_sdk/calvin_files/data/src/MemMapFile.h
src/fusion_sdk/calvin_files/data/src/ProbeSetMultiDataData.cpp
src/fusion_sdk/calvin_files/data/src/ProbeSetMultiDataData.h
src/fusion_sdk/calvin_files/data/src/ProbeSetQuantificationData.h
src/fusion_sdk/calvin_files/data/src/ProbeSetQuantificationDetectionData.h
src/fusion_sdk/calvin_files/data/src/TilingResultData.h
src/fusion_sdk/calvin_files/exception/src/DevelopmentException.cpp
src/fusion_sdk/calvin_files/exception/src/DevelopmentException.h
src/fusion_sdk/calvin_files/exception/src/ExceptionBase.cpp
src/fusion_sdk/calvin_files/exception/src/ExceptionBase.h
src/fusion_sdk/calvin_files/exception/src/InterpretationException.cpp
src/fusion_sdk/calvin_files/exception/src/InterpretationException.h
src/fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp
src/fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.h
src/fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.cpp
src/fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.h
src/fusion_sdk/calvin_files/fusion/src/FusionArrayFileReader.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionArrayFileReader.h
src/fusion_sdk/calvin_files/fusion/src/FusionBARData.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionBARData.h
src/fusion_sdk/calvin_files/fusion/src/FusionBEDData.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionBEDData.h
src/fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.h
src/fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionCDFData.h
src/fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.h
src/fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionCELData.h
src/fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h
src/fusion_sdk/calvin_files/fusion/src/FusionCHPData.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionCHPData.h
src/fusion_sdk/calvin_files/fusion/src/FusionCHPDataAdapterInterface.h
src/fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.h
src/fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.h
src/fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.h
src/fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataData.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataData.h
src/fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationData.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationData.h
src/fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationDetectionData.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationDetectionData.h
src/fusion_sdk/calvin_files/fusion/src/FusionCHPTilingData.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionCHPTilingData.h
src/fusion_sdk/calvin_files/fusion/src/FusionCoords.h
src/fusion_sdk/calvin_files/fusion/src/FusionGRDData.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionGRDData.h
src/fusion_sdk/calvin_files/fusion/src/FusionGrcFileReader.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionGrcFileReader.h
src/fusion_sdk/calvin_files/fusion/src/FusionMSKData.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionMSKData.h
src/fusion_sdk/calvin_files/fusion/src/FusionPSIData.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionPSIData.h
src/fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.h
src/fusion_sdk/calvin_files/fusion/src/FusionSMDData.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionSMDData.h
src/fusion_sdk/calvin_files/fusion/src/FusionTagValuePairType.h
src/fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp
src/fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.h
src/fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.cpp
src/fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.h
src/fusion_sdk/calvin_files/fusion/src/fusionexception.h
src/fusion_sdk/calvin_files/parameter/src/AffymetrixParameterConsts.h
src/fusion_sdk/calvin_files/parameter/src/CELAlgorithmParameterNames.h
src/fusion_sdk/calvin_files/parameter/src/Parameter.h
src/fusion_sdk/calvin_files/parameter/src/ParameterException.cpp
src/fusion_sdk/calvin_files/parameter/src/ParameterException.h
src/fusion_sdk/calvin_files/parameter/src/ParameterFileData.cpp
src/fusion_sdk/calvin_files/parameter/src/ParameterFileData.h
src/fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp
src/fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h
src/fusion_sdk/calvin_files/parsers/src/ArrayFileReader.cpp
src/fusion_sdk/calvin_files/parsers/src/ArrayFileReader.h
src/fusion_sdk/calvin_files/parsers/src/AuditFileConstants.h
src/fusion_sdk/calvin_files/parsers/src/AuditFileReader.cpp
src/fusion_sdk/calvin_files/parsers/src/AuditFileReader.h
src/fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp
src/fusion_sdk/calvin_files/parsers/src/CDFFileReader.h
src/fusion_sdk/calvin_files/parsers/src/CHPFileReader.cpp
src/fusion_sdk/calvin_files/parsers/src/CHPFileReader.h
src/fusion_sdk/calvin_files/parsers/src/CHPMultiDataFileReader.cpp
src/fusion_sdk/calvin_files/parsers/src/CHPMultiDataFileReader.h
src/fusion_sdk/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.cpp
src/fusion_sdk/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.h
src/fusion_sdk/calvin_files/parsers/src/CHPQuantificationFileReader.cpp
src/fusion_sdk/calvin_files/parsers/src/CHPQuantificationFileReader.h
src/fusion_sdk/calvin_files/parsers/src/CHPTilingFileReader.cpp
src/fusion_sdk/calvin_files/parsers/src/CHPTilingFileReader.h
src/fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp
src/fusion_sdk/calvin_files/parsers/src/CelFileReader.h
src/fusion_sdk/calvin_files/parsers/src/DATFileReader.cpp
src/fusion_sdk/calvin_files/parsers/src/DATFileReader.h
src/fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp
src/fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h
src/fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp
src/fusion_sdk/calvin_files/parsers/src/DataGroupReader.h
src/fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp
src/fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h
src/fusion_sdk/calvin_files/parsers/src/DataSetReader.cpp
src/fusion_sdk/calvin_files/parsers/src/DataSetReader.h
src/fusion_sdk/calvin_files/parsers/src/FileException.cpp
src/fusion_sdk/calvin_files/parsers/src/FileException.h
src/fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp
src/fusion_sdk/calvin_files/parsers/src/FileHeaderReader.h
src/fusion_sdk/calvin_files/parsers/src/FileInput.cpp
src/fusion_sdk/calvin_files/parsers/src/FileInput.h
src/fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.cpp
src/fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.h
src/fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp
src/fusion_sdk/calvin_files/parsers/src/GenericFileReader.h
src/fusion_sdk/calvin_files/parsers/src/GridControlFileReader.cpp
src/fusion_sdk/calvin_files/parsers/src/GridControlFileReader.h
src/fusion_sdk/calvin_files/parsers/src/ParameterFileReader.cpp
src/fusion_sdk/calvin_files/parsers/src/ParameterFileReader.h
src/fusion_sdk/calvin_files/parsers/src/SAXArrayHandlers.cpp
src/fusion_sdk/calvin_files/parsers/src/SAXArrayHandlers.h
src/fusion_sdk/calvin_files/parsers/src/SAXParameterFileHandlers.cpp
src/fusion_sdk/calvin_files/parsers/src/SAXParameterFileHandlers.h
src/fusion_sdk/calvin_files/parsers/src/SAXTemplateHandlers.cpp
src/fusion_sdk/calvin_files/parsers/src/SAXTemplateHandlers.h
src/fusion_sdk/calvin_files/parsers/src/TemplateFileReader.cpp
src/fusion_sdk/calvin_files/parsers/src/TemplateFileReader.h
src/fusion_sdk/calvin_files/parsers/src/TextFileReader.cpp
src/fusion_sdk/calvin_files/parsers/src/TextFileReader.h
src/fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h
src/fusion_sdk/calvin_files/template/src/TemplateData.cpp
src/fusion_sdk/calvin_files/template/src/TemplateData.h
src/fusion_sdk/calvin_files/template/src/TemplateId.h
src/fusion_sdk/calvin_files/utils/src/AffyStlCollectionTypes.h
src/fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp
src/fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h
src/fusion_sdk/calvin_files/utils/src/Calvin.cpp
src/fusion_sdk/calvin_files/utils/src/Calvin.h
src/fusion_sdk/calvin_files/utils/src/Coords.h
src/fusion_sdk/calvin_files/utils/src/DateTime.cpp
src/fusion_sdk/calvin_files/utils/src/DateTime.h
src/fusion_sdk/calvin_files/utils/src/FileUtils.cpp
src/fusion_sdk/calvin_files/utils/src/FileUtils.h
src/fusion_sdk/calvin_files/utils/src/GenoCallCoder.cpp
src/fusion_sdk/calvin_files/utils/src/GenoCallCoder.h
src/fusion_sdk/calvin_files/utils/src/StringUtils.cpp
src/fusion_sdk/calvin_files/utils/src/StringUtils.h
src/fusion_sdk/calvin_files/utils/src/Subgrids.h
src/fusion_sdk/calvin_files/utils/src/checksum.cpp
src/fusion_sdk/calvin_files/utils/src/checksum.h
src/fusion_sdk/calvin_files/writers/src/ArrayFileWriter.cpp
src/fusion_sdk/calvin_files/writers/src/ArrayFileWriter.h
src/fusion_sdk/calvin_files/writers/src/AuditFileWriter.cpp
src/fusion_sdk/calvin_files/writers/src/AuditFileWriter.h
src/fusion_sdk/calvin_files/writers/src/CDFCntrlFileWriter.cpp
src/fusion_sdk/calvin_files/writers/src/CDFCntrlFileWriter.h
src/fusion_sdk/calvin_files/writers/src/CDFCntrlProbeSetWriter.cpp
src/fusion_sdk/calvin_files/writers/src/CDFCntrlProbeSetWriter.h
src/fusion_sdk/calvin_files/writers/src/CDFFileWriter.cpp
src/fusion_sdk/calvin_files/writers/src/CDFFileWriter.h
src/fusion_sdk/calvin_files/writers/src/CDFProbeSetWriter.cpp
src/fusion_sdk/calvin_files/writers/src/CDFProbeSetWriter.h
src/fusion_sdk/calvin_files/writers/src/CalvinCHPFileBufferWriter.cpp
src/fusion_sdk/calvin_files/writers/src/CalvinCHPFileBufferWriter.h
src/fusion_sdk/calvin_files/writers/src/CalvinCHPFileUpdater.cpp
src/fusion_sdk/calvin_files/writers/src/CalvinCHPFileUpdater.h
src/fusion_sdk/calvin_files/writers/src/CalvinCHPFileWriter.cpp
src/fusion_sdk/calvin_files/writers/src/CalvinCHPFileWriter.h
src/fusion_sdk/calvin_files/writers/src/CalvinCHPMultiDataFileBufferWriter.cpp
src/fusion_sdk/calvin_files/writers/src/CalvinCHPMultiDataFileBufferWriter.h
src/fusion_sdk/calvin_files/writers/src/CalvinCHPMultiDataFileUpdater.cpp
src/fusion_sdk/calvin_files/writers/src/CalvinCHPMultiDataFileUpdater.h
src/fusion_sdk/calvin_files/writers/src/CalvinCHPMultiDataFileWriter.cpp
src/fusion_sdk/calvin_files/writers/src/CalvinCHPMultiDataFileWriter.h
src/fusion_sdk/calvin_files/writers/src/CalvinCHPQuantificationDetectionFileBufferWriter.cpp
src/fusion_sdk/calvin_files/writers/src/CalvinCHPQuantificationDetectionFileBufferWriter.h
src/fusion_sdk/calvin_files/writers/src/CalvinCHPQuantificationDetectionFileUpdater.cpp
src/fusion_sdk/calvin_files/writers/src/CalvinCHPQuantificationDetectionFileUpdater.h
src/fusion_sdk/calvin_files/writers/src/CalvinCHPQuantificationDetectionFileWriter.cpp
src/fusion_sdk/calvin_files/writers/src/CalvinCHPQuantificationDetectionFileWriter.h
src/fusion_sdk/calvin_files/writers/src/CalvinCHPQuantificationFileBufferWriter.cpp
src/fusion_sdk/calvin_files/writers/src/CalvinCHPQuantificationFileBufferWriter.h
src/fusion_sdk/calvin_files/writers/src/CalvinCHPQuantificationFileUpdater.cpp
src/fusion_sdk/calvin_files/writers/src/CalvinCHPQuantificationFileUpdater.h
src/fusion_sdk/calvin_files/writers/src/CalvinCHPQuantificationFileWriter.cpp
src/fusion_sdk/calvin_files/writers/src/CalvinCHPQuantificationFileWriter.h
src/fusion_sdk/calvin_files/writers/src/CalvinCHPTilingFileWriter.cpp
src/fusion_sdk/calvin_files/writers/src/CalvinCHPTilingFileWriter.h
src/fusion_sdk/calvin_files/writers/src/CalvinCelFileWriter.cpp
src/fusion_sdk/calvin_files/writers/src/CalvinCelFileWriter.h
src/fusion_sdk/calvin_files/writers/src/CombinedDatConstants.h
src/fusion_sdk/calvin_files/writers/src/CopyNumberResultWriter.cpp
src/fusion_sdk/calvin_files/writers/src/CopyNumberResultWriter.h
src/fusion_sdk/calvin_files/writers/src/DATFileUpdater.cpp
src/fusion_sdk/calvin_files/writers/src/DATFileUpdater.h
src/fusion_sdk/calvin_files/writers/src/DATFileWriter.cpp
src/fusion_sdk/calvin_files/writers/src/DATFileWriter.h
src/fusion_sdk/calvin_files/writers/src/DataGroupHeaderUpdater.cpp
src/fusion_sdk/calvin_files/writers/src/DataGroupHeaderUpdater.h
src/fusion_sdk/calvin_files/writers/src/DataGroupHeaderWriter.cpp
src/fusion_sdk/calvin_files/writers/src/DataGroupHeaderWriter.h
src/fusion_sdk/calvin_files/writers/src/DataGroupWriter.cpp
src/fusion_sdk/calvin_files/writers/src/DataGroupWriter.h
src/fusion_sdk/calvin_files/writers/src/DataSetHeaderAppend.cpp
src/fusion_sdk/calvin_files/writers/src/DataSetHeaderAppend.h
src/fusion_sdk/calvin_files/writers/src/DataSetHeaderUpdater.cpp
src/fusion_sdk/calvin_files/writers/src/DataSetHeaderUpdater.h
src/fusion_sdk/calvin_files/writers/src/DataSetHeaderWriter.cpp
src/fusion_sdk/calvin_files/writers/src/DataSetHeaderWriter.h
src/fusion_sdk/calvin_files/writers/src/DataSetUpdater.cpp
src/fusion_sdk/calvin_files/writers/src/DataSetUpdater.h
src/fusion_sdk/calvin_files/writers/src/DataSetWriter.cpp
src/fusion_sdk/calvin_files/writers/src/DataSetWriter.h
src/fusion_sdk/calvin_files/writers/src/FileHeaderUpdater.cpp
src/fusion_sdk/calvin_files/writers/src/FileHeaderUpdater.h
src/fusion_sdk/calvin_files/writers/src/FileHeaderWriter.cpp
src/fusion_sdk/calvin_files/writers/src/FileHeaderWriter.h
src/fusion_sdk/calvin_files/writers/src/FileOutput.cpp
src/fusion_sdk/calvin_files/writers/src/FileOutput.h
src/fusion_sdk/calvin_files/writers/src/FileWriteException.cpp
src/fusion_sdk/calvin_files/writers/src/FileWriteException.h
src/fusion_sdk/calvin_files/writers/src/GenericDataHeaderUpdater.cpp
src/fusion_sdk/calvin_files/writers/src/GenericDataHeaderUpdater.h
src/fusion_sdk/calvin_files/writers/src/GenericDataHeaderWriter.cpp
src/fusion_sdk/calvin_files/writers/src/GenericDataHeaderWriter.h
src/fusion_sdk/calvin_files/writers/src/GenericFileUpdater.cpp
src/fusion_sdk/calvin_files/writers/src/GenericFileUpdater.h
src/fusion_sdk/calvin_files/writers/src/GenericFileWriter.cpp
src/fusion_sdk/calvin_files/writers/src/GenericFileWriter.h
src/fusion_sdk/calvin_files/writers/src/GridControlFileWriter.cpp
src/fusion_sdk/calvin_files/writers/src/GridControlFileWriter.h
src/fusion_sdk/calvin_files/writers/src/MMDATFileWriter.cpp
src/fusion_sdk/calvin_files/writers/src/MMDATFileWriter.h
src/fusion_sdk/calvin_files/writers/src/MMDataSetDataWriter.cpp
src/fusion_sdk/calvin_files/writers/src/MMDataSetDataWriter.h
src/fusion_sdk/calvin_files/writers/src/MultiChannelCelFileCollater.cpp
src/fusion_sdk/calvin_files/writers/src/MultiChannelCelFileCollater.h
src/fusion_sdk/calvin_files/writers/src/TemplateFileWriter.cpp
src/fusion_sdk/calvin_files/writers/src/TemplateFileWriter.h
src/fusion_sdk/calvin_files/writers/src/TextFileWriter.cpp
src/fusion_sdk/calvin_files/writers/src/TextFileWriter.h
src/fusion_sdk/file/1LQFileData.cpp
src/fusion_sdk/file/1LQFileData.h
src/fusion_sdk/file/BARFileData.cpp
src/fusion_sdk/file/BARFileData.h
src/fusion_sdk/file/BARFileWriter.cpp
src/fusion_sdk/file/BARFileWriter.h
src/fusion_sdk/file/BEDFileData.cpp
src/fusion_sdk/file/BEDFileData.h
src/fusion_sdk/file/BEDFileWriter.cpp
src/fusion_sdk/file/BEDFileWriter.h
src/fusion_sdk/file/BPMAPFileData.cpp
src/fusion_sdk/file/BPMAPFileData.h
src/fusion_sdk/file/BPMAPFileWriter.cpp
src/fusion_sdk/file/BPMAPFileWriter.h
src/fusion_sdk/file/CDFFileData.cpp
src/fusion_sdk/file/CDFFileData.h
src/fusion_sdk/file/CELFileData.cpp
src/fusion_sdk/file/CELFileData.h
src/fusion_sdk/file/CELFileWriter.cpp
src/fusion_sdk/file/CELFileWriter.h
src/fusion_sdk/file/CHPFileBufferWriter.cpp
src/fusion_sdk/file/CHPFileBufferWriter.h
src/fusion_sdk/file/CHPFileData.cpp
src/fusion_sdk/file/CHPFileData.h
src/fusion_sdk/file/CHPFileUpdater.cpp
src/fusion_sdk/file/CHPFileUpdater.h
src/fusion_sdk/file/CHPFileWriter.cpp
src/fusion_sdk/file/CHPFileWriter.h
src/fusion_sdk/file/CMSFileData.cpp
src/fusion_sdk/file/CMSFileData.h
src/fusion_sdk/file/DATFileData.cpp
src/fusion_sdk/file/DATFileData.h
src/fusion_sdk/file/DttArrayFileReader.cpp
src/fusion_sdk/file/DttArrayFileReader.h
src/fusion_sdk/file/EXPFileData.cpp
src/fusion_sdk/file/EXPFileData.h
src/fusion_sdk/file/FileIO.cpp
src/fusion_sdk/file/FileIO.h
src/fusion_sdk/file/FileWriter.cpp
src/fusion_sdk/file/FileWriter.h
src/fusion_sdk/file/GQCFileData.cpp
src/fusion_sdk/file/GQCFileData.h
src/fusion_sdk/file/GRCFileData.cpp
src/fusion_sdk/file/GRCFileData.h
src/fusion_sdk/file/GRCFileWriter.cpp
src/fusion_sdk/file/GRCFileWriter.h
src/fusion_sdk/file/GRDFileData.cpp
src/fusion_sdk/file/GRDFileData.h
src/fusion_sdk/file/GRDFileWriter.cpp
src/fusion_sdk/file/GRDFileWriter.h
src/fusion_sdk/file/GridControlData.h
src/fusion_sdk/file/GridCoordinates.h
src/fusion_sdk/file/IniFile.cpp
src/fusion_sdk/file/IniFile.h
src/fusion_sdk/file/IntervalEntry.h
src/fusion_sdk/file/MDLFileData.cpp
src/fusion_sdk/file/MDLFileData.h
src/fusion_sdk/file/MSKFileData.cpp
src/fusion_sdk/file/MSKFileData.h
src/fusion_sdk/file/MSKFileWriter.cpp
src/fusion_sdk/file/MSKFileWriter.h
src/fusion_sdk/file/PSIFileData.cpp
src/fusion_sdk/file/PSIFileData.h
src/fusion_sdk/file/SAXDttArrayHandlers.cpp
src/fusion_sdk/file/SAXDttArrayHandlers.h
src/fusion_sdk/file/SMDFileData.cpp
src/fusion_sdk/file/SMDFileData.h
src/fusion_sdk/file/SimpleBinaryFile.cpp
src/fusion_sdk/file/SimpleBinaryFile.h
src/fusion_sdk/file/TagValuePair.h
src/fusion_sdk/file/TsvFile/BgpFile.cpp
src/fusion_sdk/file/TsvFile/BgpFile.h
src/fusion_sdk/file/TsvFile/ClfFile.cpp
src/fusion_sdk/file/TsvFile/ClfFile.h
src/fusion_sdk/file/TsvFile/DumpPgf.cpp
src/fusion_sdk/file/TsvFile/DumpPgf.h
src/fusion_sdk/file/TsvFile/PgfFile.cpp
src/fusion_sdk/file/TsvFile/PgfFile.h
src/fusion_sdk/file/TsvFile/SequentialClfFile.cpp
src/fusion_sdk/file/TsvFile/SequentialClfFile.h
src/fusion_sdk/file/TsvFile/SnpTable.cpp
src/fusion_sdk/file/TsvFile/SnpTable.h
src/fusion_sdk/file/TsvFile/SpfFile.cpp
src/fusion_sdk/file/TsvFile/SpfFile.h
src/fusion_sdk/file/TsvFile/TsvFile.cpp
src/fusion_sdk/file/TsvFile/TsvFile.h
src/fusion_sdk/file/TsvFile/TsvFileDiff.cpp
src/fusion_sdk/file/TsvFile/TsvFileDiff.h
src/fusion_sdk/file/TsvFile/TsvJoin.cpp
src/fusion_sdk/file/TsvFile/TsvJoin.h
src/fusion_sdk/file/TsvFile/apt-dump-pgf.cpp
src/fusion_sdk/file/TsvFile/apt-tsv-join.cpp
src/fusion_sdk/file/TsvFile/tsv-example.cpp
src/fusion_sdk/file/TsvFile/tsv-test.cpp
src/fusion_sdk/file/TsvFile/tsv-util.cpp
src/fusion_sdk/file/test-fileio.cpp
src/fusion_sdk/portability/affy-base-types.h
src/fusion_sdk/portability/affy-system-api.h
src/fusion_sdk/portability/apt-no-warnings.h
src/fusion_sdk/portability/apt-win-dll.h
src/fusion_sdk/util/AffxArray.h
src/fusion_sdk/util/AffxBinaryFile.cpp
src/fusion_sdk/util/AffxBinaryFile.h
src/fusion_sdk/util/AffxByteArray.cpp
src/fusion_sdk/util/AffxByteArray.h
src/fusion_sdk/util/AffxConv.cpp
src/fusion_sdk/util/AffxConv.h
src/fusion_sdk/util/AffxMultiDimensionalArray.h
src/fusion_sdk/util/AffxSTL.h
src/fusion_sdk/util/AffxSplitArray.h
src/fusion_sdk/util/AffxStatistics.cpp
src/fusion_sdk/util/AffxStatistics.h
src/fusion_sdk/util/AffxString.cpp
src/fusion_sdk/util/AffxString.h
src/fusion_sdk/util/AffxTime.cpp
src/fusion_sdk/util/AffxTime.h
src/fusion_sdk/util/AptErrno.h
src/fusion_sdk/util/AptVersionInfo.h
src/fusion_sdk/util/BaseEngine.cpp
src/fusion_sdk/util/BaseEngine.h
src/fusion_sdk/util/CalvinChpCheck.h
src/fusion_sdk/util/CalvinToText.cpp
src/fusion_sdk/util/CalvinToText.h
src/fusion_sdk/util/CelCheck.h
src/fusion_sdk/util/ChpCheck.h
src/fusion_sdk/util/Convert.cpp
src/fusion_sdk/util/Convert.h
src/fusion_sdk/util/DotProgress.cpp
src/fusion_sdk/util/DotProgress.h
src/fusion_sdk/util/Engines.h
src/fusion_sdk/util/Err.cpp
src/fusion_sdk/util/Err.h
src/fusion_sdk/util/ErrHandler.h
src/fusion_sdk/util/Except.h
src/fusion_sdk/util/FrugalVector.h
src/fusion_sdk/util/Fs.cpp
src/fusion_sdk/util/Fs.h
src/fusion_sdk/util/FsPath.cpp
src/fusion_sdk/util/FsPath.h
src/fusion_sdk/util/Guid.cpp
src/fusion_sdk/util/Guid.h
src/fusion_sdk/util/LineFile.cpp
src/fusion_sdk/util/LineFile.h
src/fusion_sdk/util/LogStream.cpp
src/fusion_sdk/util/LogStream.h
src/fusion_sdk/util/MatrixCheck.h
src/fusion_sdk/util/MessageStream.h
src/fusion_sdk/util/MixedFileCheck.h
src/fusion_sdk/util/MsgHandler.h
src/fusion_sdk/util/MsgSocketHandler.cpp
src/fusion_sdk/util/MsgSocketHandler.h
src/fusion_sdk/util/MsgStream.cpp
src/fusion_sdk/util/MsgStream.h
src/fusion_sdk/util/Options.cpp
src/fusion_sdk/util/Options.h
src/fusion_sdk/util/OutputMessageStream.cpp
src/fusion_sdk/util/OutputMessageStream.h
src/fusion_sdk/util/PgOptions.cpp
src/fusion_sdk/util/PgOptions.h
src/fusion_sdk/util/Progress.h
src/fusion_sdk/util/ProgressDot.h
src/fusion_sdk/util/ProgressHandler.h
src/fusion_sdk/util/RowFile.cpp
src/fusion_sdk/util/RowFile.h
src/fusion_sdk/util/SQLite.cpp
src/fusion_sdk/util/SQLite.h
src/fusion_sdk/util/SocketBase.cpp
src/fusion_sdk/util/SocketBase.h
src/fusion_sdk/util/SocketClient.cpp
src/fusion_sdk/util/SocketClient.h
src/fusion_sdk/util/SocketEngine.cpp
src/fusion_sdk/util/SocketEngine.h
src/fusion_sdk/util/SocketHandler.cpp
src/fusion_sdk/util/SocketHandler.h
src/fusion_sdk/util/SocketServer.cpp
src/fusion_sdk/util/SocketServer.h
src/fusion_sdk/util/SocketTextHandler.cpp
src/fusion_sdk/util/SocketTextHandler.h
src/fusion_sdk/util/SocketUtil.cpp
src/fusion_sdk/util/SocketUtil.h
src/fusion_sdk/util/TableFile.cpp
src/fusion_sdk/util/TableFile.h
src/fusion_sdk/util/TextFileCheck.h
src/fusion_sdk/util/TmpFileFactory.cpp
src/fusion_sdk/util/TmpFileFactory.h
src/fusion_sdk/util/Util.cpp
src/fusion_sdk/util/Util.h
src/fusion_sdk/util/Verbose.cpp
src/fusion_sdk/util/Verbose.h
src/fusion_sdk/util/VerboseErrHandler.h
src/fusion_sdk/util/apt-check-calvinchp.cpp
src/fusion_sdk/util/apt-check-cel.cpp
src/fusion_sdk/util/apt-check-chp.cpp
src/fusion_sdk/util/apt-check-matrix.cpp
src/fusion_sdk/util/apt-check-mixedfile.cpp
src/fusion_sdk/util/apt-check-textfile.cpp
src/fusion_sdk/util/apt-engine-wrapper.cpp
src/fusion_sdk/util/apt-engine-wrapper.vcproj
src/fusion_sdk/util/chksum.cpp
src/fusion_sdk/util/chksum.h
src/fusion_sdk/util/dump-guid.cpp
src/fusion_sdk/util/md5.cpp
src/fusion_sdk/util/md5.h
src/fusion_sdk/util/md5sum.cpp
src/fusion_sdk/util/md5sum.h
src/fusion_sdk/util/test-md5sum.cpp
src/fusion_sdk/util/test-tmpfilefactory.cpp
src/fusion_sdk/util/util-meminfo.cpp
tests/convertCel.R tests/readCdfDataFrame.R tests/readCdfQc.R tests/readCdfUnitsWriteMap.R tests/readCdfUnits_etal.R tests/readCel.R tests/readCelIntensities.R tests/readCelRectangle.R tests/readCelUnits.R tests/readPgf.R tests/testWriteAndReadEmptyCdf.R tests/testWriteAndReadEmptyCel.R tests/torture/tortureReadCdfUnits.R tests/torture/tortureReadCel.R tests/torture/tortureReadCelHeader.R tests/torture/tortureReadCelUnits.R tests/validate/validateCelFileFormats.R
Bioconductor-mirror/affxparser documentation built on June 1, 2017, 4:14 a.m.