Files in Bioconductor-mirror/affy
Methods for Affymetrix Oligonucleotide Arrays

.Rbuildignore
DESCRIPTION
NAMESPACE
NEWS
R/AffyBatch.R R/AffyRNAdeg.R R/ProbeSet.R R/ProgressBarText.R R/avdiff.R R/barplot.ProbeSet.R R/bg.Affy.chipwide.R R/bg.R R/expresso.R R/expressoWidget.R R/fit.li.wong.R R/generateExprVal.method.avgdiff.R R/generateExprVal.method.liwong.R R/generateExprVal.method.mas.R R/generateExprVal.method.medianpolish.R R/generateExprVal.method.playerout.R R/getCDFenv.R R/hlog.R R/justrma.R R/loess.normalize.R R/maffy.R R/mas5.R R/merge.AffyBatch.R R/mva.pairs.R R/normalize.constant.R R/normalize.contrasts.R R/normalize.invariantset.R R/normalize.loess.R R/normalize.qspline.R R/normalize.quantiles.R R/pairs.AffyBatch.R R/plot.ProbeSet.R R/plot.density.R R/plotLocation.R R/pmcorrect.mas.R R/ppset.ttest.R R/ppsetApply.R R/read.affybatch.R R/rma.R R/summary.R R/tukey.biweight.R R/whatcdf.R R/xy2indices.R R/zzz.R
TITLE
aclocal.m4
changelog
cleanup
configure
configure.in
data/SpikeIn.rda
data/cdfenv.example.rda
data/mapCdfName.rda
demo/00Index
demo/affy.tour.R
inst/CITATION
inst/tests/affybatch.R inst/tests/bg.correct.R inst/tests/expression.values.R inst/tests/normalize.methods.R man/AffyBatch-class.Rd man/AffyRNAdeg.Rd man/MAplot.Rd man/ProbeSet-class.Rd man/ProgressBarText-class.Rd man/SpikeIn.Rd man/affy-deprecated.Rd man/affy-options.Rd man/affy.scalevalue.exprSet.Rd man/barplot.ProbeSet.Rd man/bg.adjust.Rd man/bgc.Rd man/cdfFromBioC.Rd man/cdfenv.example.Rd man/cleancdfname.Rd man/debug.affy123.Rd man/expresso.Rd man/expressoWidget.Rd man/fit.li.wong.Rd man/generateExprSet-methods.Rd man/generateExprVal-methods.Rd man/generateExprVal.method.avgdiff.Rd man/generateExprVal.method.playerout.Rd man/hlog.Rd man/justrma.Rd man/list.celfiles.Rd man/maffy.subset.Rd man/mas5.Rd man/mas5calls.Rd man/merge.AffyBatch.Rd man/mva.pairs.Rd man/normalize-methods.Rd man/normalize.constant.Rd man/normalize.contrast.Rd man/normalize.invariantset.Rd man/normalize.loess.Rd man/normalize.qspline.Rd man/normalize.quantiles.Rd man/normalize.quantiles.robust.Rd man/pairs.AffyBatch.Rd man/plot.ProbeSet.Rd man/plot.density.Rd man/plotLocation.Rd man/pmcorrect.Rd man/ppsetApply.Rd man/probeMatch-methods.Rd man/probeNames-methods.Rd man/read.affybatch.Rd man/read.probematrix.Rd man/rma.Rd man/setAffyOptions.Rd man/summary.Rd man/tukey.biweight.Rd man/whatcdf.Rd man/xy2indices.Rd
src/Makevars.in
src/Makevars.win
src/chipbackground.c
src/getall_locations.c
src/mas5calls.c
src/rma2.c
src/rma_common.c
src/rma_common.h
vignettes/EWSnap.png
vignettes/affy.Rnw
vignettes/affy.bib
vignettes/builtinMethods.Rnw
vignettes/customMethods.Rnw
vignettes/image.png
vignettes/vim.Rnw
vignettes/widget1.ps
vignettes/widget2.ps
vignettes/widgetfilechooser.png
Bioconductor-mirror/affy documentation built on June 1, 2017, 4:15 a.m.