API for Bioconductor-mirror/affyPLM
Methods for fitting probe-level models

Global functions
MAplot Man page
MAplot,PLMset-method Man page
Mbox Man page
Mbox,PLMset-method Man page
NUSE Man page
NUSE,PLMset-method Man page
PLM.designmatrix Man page
PLM.designmatrix2 Man page
PLM.designmatrix3 Man page Source code
PLMset Man page
PLMset-class Man page
PLMset2exprSet Man page Source code
RLE Man page
RLE,PLMset-method Man page
ReadRMAExpress Man page Source code
annotation,PLMset-method Man page
bg.correct.LESN Man page Source code
bg.correct.gcrma Man page Source code
bg.correct.shift Man page Source code
bg.correct.stretch Man page Source code
boxplot,PLMset-method Man page
cdfName,PLMset-method Man page
coefs Man page
coefs,PLMset-method Man page
coefs.const Man page
coefs.const,PLMset-method Man page
coefs.probe Man page
coefs.probe,PLMset-method Man page
coefs<- Man page
coefs<-,PLMset-method Man page
convert.LESN.param Man page Source code
description,PLMset-method Man page
fitPLM Man page Source code
fitPLM.old Man page
get.background.code Man page Source code
get.default.psi.k Man page Source code
get.normalization.code Man page Source code
get.psi.code Man page Source code
get.summary.code Man page Source code
getCdfInfo,PLMset-method Man page
image,PLMset-method Man page
indexProbes,PLMset,character-method Man page
indexProbesProcessed Man page
indexProbesProcessed,PLMset-method Man page
model.description Man page
model.description,PLMset-method Man page
nitAffyBatchFunctions Source code
nitExprSetFunctions Source code
nitNormfunctions Source code
normalize.AffyBatch.quantiles.chromosome Man page Source code
normalize.AffyBatch.quantiles.probeset Man page Source code
normalize.AffyBatch.scaling Man page Source code
normalize.ExpressionSet.contrasts Man page Source code
normalize.ExpressionSet.invariantset Man page Source code
normalize.ExpressionSet.loess Man page Source code
normalize.ExpressionSet.methods Man page Source code
normalize.ExpressionSet.qspline Man page Source code
normalize.ExpressionSet.quantiles Man page Source code
normalize.ExpressionSet.scaling Man page Source code
normalize.scaling Man page Source code
normvec Man page
normvec,PLMset-method Man page
nuse Man page
nuse,PLMset-method Man page
onLoad Source code
pData,PLMset-method Man page
pData<-,PLMset,data.frame-method Man page
phenoData,PLMset-method Man page
phenoData<-,PLMset,AnnotatedDataFrame-method Man page
preprocess Man page Source code
pset2eset Man page Source code
pseudoColorBar Man page Source code
pseudoPalette Man page Source code
resid Man page
resid,PLMset-method Man page
resid<- Man page
resid<-,PLMset-method Man page
residSE Man page
residSE,PLMset-method Man page
residuals Man page
residuals,PLMset-method Man page
residuals<- Man page
residuals<-,PLMset-method Man page
rmaPLM Man page Source code
sampleNames,PLMset-method Man page
sampleNames<- Man page
sampleNames<-,PLMset,character-method Man page
se Man page
se,PLMset-method Man page
se.const Man page
se.const,PLMset-method Man page
se.probe Man page
se.probe,PLMset-method Man page
se<- Man page
se<-,PLMset-method Man page
show,PLMset-method Man page
summary,PLMset-method Man page
threestep Man page Source code
threestepPLM Man page Source code
varcov Man page
varcov,PLMset-method Man page
verify.bg.param Man page Source code
verify.constraint.types Man page Source code
verify.model.param Man page Source code
verify.norm.param Man page Source code
verify.output.param Man page Source code
verify.variable.types Man page Source code
weights Man page
weights,PLMset-method Man page
weights<- Man page
weights<-,PLMset-method Man page
Bioconductor-mirror/affyPLM documentation built on June 1, 2017, 4:16 a.m.