Files in Bioconductor-mirror/affyPLM
Methods for fitting probe-level models

.Rbuildignore
CHANGELOG
DESCRIPTION
NAMESPACE
R/LESN.R R/PLMSet2exprSet.R R/PLMset.R R/ReadRMAExpress.R R/bg.correct.gcrma.R R/fitPLM.R R/init_fns.R R/internalfunctions.R R/normalize.exprSet.R R/normalize.scaling.R R/preprocess.R R/quantile_extensions.R R/rmaPLM.R R/threestep.R R/threestepPLM.R
inst/CITATION
man/MAplot.Rd man/PLMset-class.Rd man/PLMset2exprSet.Rd man/ReadRMAExpress.Rd man/affyPLM-internal.Rd man/bg.correct.LESN.Rd man/fitPLM.Rd man/normalize.exprSet.Rd man/normalize.quantiles.probeset.Rd man/normalize.scaling.Rd man/preprocess.Rd man/pseudo.Rd man/rmaPLM.Rd man/threestep.Rd man/threestepPLM.Rd
src/LESN.c
src/LESN.h
src/Makevars
src/Makevars.win
src/PLM_avg_log.c
src/PLM_avg_log.h
src/PLM_biweight.c
src/PLM_biweight.h
src/PLM_log_avg.c
src/PLM_log_avg.h
src/PLM_medianPM.c
src/PLM_medianPM.h
src/PLM_median_logPM.c
src/PLM_median_logPM.h
src/PLM_medianpolish.c
src/PLM_medianpolish.h
src/PLM_modelmatrix.c
src/PLM_modelmatrix.h
src/SCAB.c
src/chipbackground.c
src/common_types.c
src/common_types.h
src/do_PLMrlm.c
src/do_PLMrlm.h
src/do_PLMrma.c
src/do_PLMrma.h
src/do_PLMthreestep.c
src/do_PLMthreestep.h
src/dqrls.h
src/idealmismatch.c
src/idealmismatch.h
src/lm_threestep.c
src/lm_threestep.h
src/matrix_functions.c
src/matrix_functions.h
src/nthLargestPM.c
src/nthLargestPM.h
src/preprocess.c
src/preprocess.h
src/psi_fns.c
src/psi_fns.h
src/qnorm_probeset.c
src/qnorm_probeset.h
src/read_rmaexpress.c
src/rlm_PLM.c
src/rlm_threestep.c
src/rlm_threestep.h
src/rmaPLM_pseudo.c
src/rmaPLM_pseudo.h
src/rma_PLM.c
src/rma_common.c
src/rma_common.h
src/scaling.c
src/scaling.h
src/threestep.c
src/threestep_PLM.c
src/threestep_common.c
src/threestep_common.h
src/threestep_summary.c
src/threestep_summary.h
src/threestep_summary_methods.c
src/threestep_summary_methods.h
src/threestep_summary_methods_param.h
src/transfns.c
src/transfns.h
tests/C_code_tests.R tests/PLM_tests.R tests/preprocess_tests.R tests/threestepPLM_tests.R
vignettes/00Index.dcf
vignettes/AffyExtensions.Rnw
vignettes/AffyExtensions.bib
vignettes/MAplots.Rnw
vignettes/QualityAssess.Rnw
vignettes/ThreeStep.Rnw
vignettes/negresid.png
vignettes/posresid.png
vignettes/resid.png
vignettes/weights.png
Bioconductor-mirror/affyPLM documentation built on June 1, 2017, 4:16 a.m.