API for Bioconductor-mirror/affyPara
Parallelized preprocessing methods for Affymetrix Oligonucleotide Arrays

Global functions
MAplotPara Man page Source code
MAplotParaSFgMean Source code
MAplotSer Man page Source code
ReadHeaderSF Source code
bgCorrectPara Man page Source code
bgCorrectParaSF Source code
boxplotPara Man page Source code
boxplotParaCalAllDiff Source code
boxplotParaCheckPercent Source code
boxplotParaCheckPercentSamples Source code
boxplotParaCheckTypDef Source code
boxplotParaChecknSamples Source code
boxplotParaComStatsM Source code
boxplotParaDrawn Source code
boxplotParaSFgParBox Source code
boxplotParacheckCritSamp Source code
boxplotParagCrSamp Source code
boxplotParagLimits Source code
boxplotParagMdMnDef Source code
boxplotParagMedIQR Source code
boxplotSplit Source code
calculateExprSetSF Source code
checkPartSize Source code
class:vsnInputPara Man page
combineMatrices Man page Source code
computeExprSetPara Man page Source code
createSumMatrix Source code
dim,vsnInputPara-method Man page
distributeFiles Man page Source code
doSummarizationPara Source code
drawHistDiff Source code
drawMAplot Source code
drawnBxp Source code
generateMatrizenSF Source code
getAffyBatchSF Source code
getArrayLoessSF Source code
getArraySF Source code
getBadQCLoessSigma Source code
getBoxplot Source code
getColSF Source code
getCompIntensityMatrixSF Source code
getCompIntensitySF Source code
getDifferenceBox Source code
getFUNAffyBatchSF Source code
getIntensitySF Source code
getLevelsBQ Source code
getMatrixBQBoxLevels Source code
getMatrixBQLevels Source code
getNumberPlots Source code
getObjectType Source code
getSumResults Source code
getTotalBoxToDrawn Source code
getValuesChips Source code
grad_loglikPara Source code
grad_loglikParaSF Source code
hirarchicalDistSF Source code
justvsnPara Man page Source code
logikPara Source code
logikParaSF1 Source code
logikParaSF2 Source code
makeCluster Man page Source code
mergeAffyBatches Man page Source code
ncol,vsnInputPara-method Man page
ndexValueL Source code
nitAffyBatchSF Source code
normalizeAffyBatchConstantPara Man page Source code
normalizeAffyBatchInvariantsetPara Man page Source code
normalizeAffyBatchLoessIterPara Man page Source code
normalizeAffyBatchLoessPara Man page Source code
normalizeAffyBatchQuantilesPara Man page Source code
normalizeConstantPara Source code
normalizeConstantParaSF1 Source code
normalizeConstantParaSF2 Source code
normalizeInvariantsetPara Source code
normalizeInvariantsetParaSF1 Source code
normalizeInvariantsetParaSF2 Source code
normalizeLoessIterPara Source code
normalizeLoessIterParaSFnodes Source code
normalizeLoessPara Source code
normalizeLoessParaSFbetNodes Source code
normalizeLoessParaSFnodes Source code
normalizeQuantilesPara Man page Source code
normalizeQuantilesParaSF1 Source code
normalizeQuantilesParaSF2 Source code
nrow,vsnInputPara-method Man page
onAttach Source code
onLoad Source code
permArrays Source code
permMatrix Source code
preproPara Man page Source code
read.affybatchPara Man page Source code
reassignMatrizenSF Source code
removeDistributedFiles Man page Source code
removeNA Source code
resetABSF Source code
resetMatSF Source code
rmaPara Man page Source code
rowMeansPara Source code
rowMeansParaSF Source code
rowVPara Source code
rowVParaSF Source code
setArraySF Source code
setColSF Source code
setIntMatSF Source code
setupPara Source code
setupParaSF Source code
splitAffyBatch Man page Source code
splitFileVector Man page Source code
splitMatrix Man page Source code
stopCluster Man page Source code
summaryM1M2Para Man page Source code
vsn2Para Man page Source code
vsn2_optimPara Source code
vsn2trsfPara Source code
vsn2trsfParaSF Source code
vsnColumnByColumnPara Source code
vsnColumnByColumnParaSF Source code
vsnInputPara Man page
vsnInputPara-class Man page
vsnLTSPara Source code
vsnMLPara Source code
vsnMatrixPara Source code
vsnSamplePara Source code
vsnStrataPara Source code
vsnrmaPara Man page Source code
writeArraySF Source code
writeLinesSF Source code
writeMeansArraySF Source code
Bioconductor-mirror/affyPara documentation built on June 1, 2017, 4:16 a.m.