Files in Bioconductor-mirror/aroma.light
Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data Types

.Rbuildignore
.Rinstignore
.gitignore
.make/Makefile
.travis.yml
DESCRIPTION
Makefile
NAMESPACE
NEWS
R/000.R R/901.CalibrationAndNormalization.R R/999.NonDocumentedObjects.R R/999.package.R R/averageQuantile.R R/backtransformAffine.R R/backtransformPrincipalCurve.R R/backtransformXYCurve.matrix.R R/calibrateMultiscan.R R/callNaiveGenotypes.R R/distanceBetweenLines.R R/findPeaksAndValleys.R R/fitIWPCA.R R/fitNaiveGenotypes.R R/fitPrincipalCurve.R R/fitXYCurve.R R/iwpca.R R/likelihood.smooth.spline.R R/linearAlgebra.R R/lines.XYCurveFit.R R/medianPolish.R R/normalizeAffine.R R/normalizeAverage.R R/normalizeCurveFit.R R/normalizeDifferencesToAverage.R R/normalizeFragmentLength.R R/normalizeQuantileRank.R R/normalizeQuantileRank.matrix.R R/normalizeQuantileSpline.R R/normalizeTumorBoost.R R/pairedAlleleSpecificCopyNumbers.R R/plotDensity.R R/plotMvsA.R R/plotMvsAPairs.R R/plotMvsMPairs.R R/plotXYCurve.R R/predict.lowess.R R/print.SmoothSplineLikelihood.R R/robustSmoothSpline.R R/rowAverages.matrix.R R/sampleCorrelations.matrix.R R/sampleTuples.R R/wpca.R R/zzz.R README.md
appveyor.yml
incl/BengtssonH_2003.bib.Rdoc
incl/BengtssonH_etal_2004.bib.Rdoc
incl/BengtssonH_etal_2008.bib.Rdoc
incl/BengtssonH_etal_2009.bib.Rdoc
incl/BengtssonHossjer_2006.bib.Rdoc
incl/BengtssonNeuvial_2010.bib.Rdoc
incl/backtransformAffine.matrix.Rex
incl/backtransformPrincipalCurve.matrix.Rex
incl/callNaiveGenotypes.Rex
incl/distanceBetweenLines.Rex
incl/findPeaksAndValleys.Rex
incl/fitPrincipalCurve.matrix.Rex
incl/fitXYCurve.matrix.Rex
incl/iwpca.matrix.Rex
incl/likelihood.smooth.spline.Rex
incl/medianPolish.matrix.Rex
incl/normalizeAffine.matrix.Rex
incl/normalizeCurveFit.matrix.Rex
incl/normalizeDifferencesToAverage.Rex
incl/normalizeFragmentLength-ex1.Rex
incl/normalizeFragmentLength-ex2.Rex
incl/normalizeQuantileRank.list.Rex
incl/normalizeQuantileRank.matrix.Rex
incl/normalizeQuantileSpline.matrix.Rex
incl/normalizeTumorBoost,flavors.Rex
incl/normalizeTumorBoost.Rex
incl/robustSmoothSpline.Rex
incl/sampleCorrelations.matrix.Rex
incl/sampleTuples.Rex
incl/wpca.matrix.Rex
incl/wpca2.matrix.Rex
inst/CITATION
inst/data-ex/PMT-RGData.dat
inst/data-ex/TumorBoost,fracB,exampleData.Rbin
inst/rsp/.rspPlugins
inst/rsp/AffineNormalization/AffineNormalization.html.rsp
inst/rsp/MultiscanCalibration/MultiscanCalibration.html.rsp
inst/rsp/NormalizationWithWeights/NormalizationWithWeights.html.rsp
inst/rsp/NormalizationWithWeights/TypesOfWeights.html
inst/rsp/R/weightedAffineNormalization.Rex
inst/rsp/R/weightedCurveFitNormalization.Rex
inst/rsp/README
inst/rsp/bgcorrection.html.rsp
inst/rsp/figures/CalibrateMultiscan-GreenChannel-after.png
inst/rsp/figures/CalibrateMultiscan-GreenChannel-before.png
inst/rsp/figures/CalibrateMultiscan-RedChannel-after.png
inst/rsp/figures/CalibrateMultiscan-RedChannel-before.png
inst/rsp/figures/NormalizeAffine-after.png
inst/rsp/figures/NormalizeAffine-before.png
inst/rsp/figures/NormalizeAffine-nonweighted.png
inst/rsp/figures/NormalizeAffine-raw.png
inst/rsp/figures/NormalizeAffine-weighted.png
inst/rsp/figures/NormalizeCurveFit-nonweighted.png
inst/rsp/figures/NormalizeCurveFit-raw.png
inst/rsp/figures/NormalizeCurveFit-weighted.png
inst/rsp/index.html.rsp
inst/rsp/preprocessing.html.rsp
inst/rsp/references.html.rsp
inst/rsp/src/simpleFooter.html.rsp
inst/rsp/src/simpleHead.html.rsp
inst/rsp/src/simpleHeader.html.rsp
inst/rsp/style.css
man/1._Calibration_and_Normalization.Rd man/Non-documented_objects.Rd man/aroma.light-package.Rd man/averageQuantile.Rd man/backtransformAffine.Rd man/backtransformPrincipalCurve.Rd man/calibrateMultiscan.Rd man/callNaiveGenotypes.Rd man/distanceBetweenLines.Rd man/findPeaksAndValleys.Rd man/fitIWPCA.Rd man/fitNaiveGenotypes.Rd man/fitPrincipalCurve.Rd man/fitXYCurve.Rd man/iwpca.Rd man/likelihood.smooth.spline.Rd man/medianPolish.Rd man/normalizeAffine.Rd man/normalizeAverage.Rd man/normalizeCurveFit.Rd man/normalizeDifferencesToAverage.Rd man/normalizeFragmentLength.Rd man/normalizeQuantileRank.Rd man/normalizeQuantileRank.matrix.Rd man/normalizeQuantileSpline.Rd man/normalizeTumorBoost.Rd man/pairedAlleleSpecificCopyNumbers.Rd man/plotDensity.Rd man/plotMvsA.Rd man/plotMvsAPairs.Rd man/plotMvsMPairs.Rd man/plotXYCurve.Rd man/print.SmoothSplineLikelihood.Rd man/robustSmoothSpline.Rd man/sampleCorrelations.Rd man/sampleTuples.Rd man/wpca.Rd revdep/README.md revdep/check.R
revdep/checks.rds
revdep/problems.md revdep/timing.md tests/backtransformAffine.matrix.R tests/backtransformPrincipalCurve.matrix.R tests/callNaiveGenotypes.R tests/distanceBetweenLines.R tests/findPeaksAndValleys.R tests/fitPrincipalCurve.matrix.R tests/fitXYCurve.matrix.R tests/iwpca.matrix.R tests/likelihood.smooth.spline.R tests/medianPolish.matrix.R tests/normalizeAffine.matrix.R tests/normalizeAverage.list.R tests/normalizeAverage.matrix.R tests/normalizeCurveFit.matrix.R tests/normalizeDifferencesToAverage.R tests/normalizeFragmentLength-ex1.R tests/normalizeFragmentLength-ex2.R tests/normalizeQuantileRank.list.R tests/normalizeQuantileRank.matrix.R tests/normalizeQuantileSpline.matrix.R tests/normalizeTumorBoost,flavors.R tests/normalizeTumorBoost.R tests/robustSmoothSpline.R tests/rowAverages.matrix.R tests/sampleCorrelations.matrix.R tests/sampleTuples.R tests/wpca.matrix.R tests/wpca2.matrix.R
Bioconductor-mirror/aroma.light documentation built on June 1, 2017, 4:21 a.m.