Files in Bioconductor-mirror/beadarraySNP
Normalization and reporting of Illumina SNP bead arrays

DESCRIPTION
NAMESPACE
R/AllClasses.R R/AllGenerics.R R/SnpSetIlluminaConversion.r R/SnpSetIlluminaGenotypes.R R/SnpSetIlluminaInteractive.R R/SnpSetIlluminaNormalize.R R/SnpSetIlluminaQC.R R/SnpSetIlluminaReports.R R/SnpSetIlluminaSegment.R R/SnpSetIlluminaSmoothing.r R/methods-QCIllumina.R R/methods-SnpSetIllumina.R R/methods-SnpSetSegments.R
data/QC.260.rda
data/chr17.260.rda
inst/testdata/11186795_GS0005704-OPA_LinkageIV_v3.opa
inst/testdata/1280260_R002_C012.csv
inst/testdata/1280260_R003_C012.csv
inst/testdata/1280260_R007_C010.csv
inst/testdata/1280260_R008_C010.csv
inst/testdata/4samples_opa4.csv
inst/testdata/GS0005704-OPA_LocusByDNA.csv
inst/testdata/targets.txt
man/BeadstudioQC.Rd man/CopynumberConversion.Rd man/Datasets.Rd man/GenomicReports.Rd man/GetBeadStudioSampleNames.Rd man/PolarTransforms.Rd man/QCIllumina-class.Rd man/Sample_Map2Samplesheet.Rd man/SnpSetSegments-class.Rd man/alterCN.Rd man/arrayType.Rd man/backgroundCorrect.SNP.Rd man/backgroundEstimate.Rd man/calculateLOH.Rd man/calculateQCarray.Rd man/class.SnpSetIllumina.Rd man/compareGenotypes.Rd man/createCNSummary.Rd man/dist.GT.Rd man/getDNAindex.Rd man/heterozygosity.Rd man/heterozygousSNPs.Rd man/interactiveCNselect.Rd man/normalizeBetweenAlleles.SNP.Rd man/normalizeBetweenSubsamples.SNP.Rd man/normalizeLoci.SNP.Rd man/normalizeWithinArrays.SNP.Rd man/pdfChromosomesSmoothCopyNumber.Rd man/pdfQC.Rd man/plotGoldenGate4OPA.Rd man/plotQC.Rd man/read.SnpSetIllumina.Rd man/removeLowQualityProbes.Rd man/removeLowQualitySamples.Rd man/renameOPA.Rd man/reportGenotypeSegmentation.Rd man/reportSamplePanelQC-methods.Rd man/segmentate.Rd man/setRealCN.Rd man/smoothed.intensity.Rd man/standardNormalization.Rd
vignettes/beadarraySNP.rnw
Bioconductor-mirror/beadarraySNP documentation built on June 1, 2017, 4:25 a.m.