Bioconductor-mirror/biotmle: Targeted Learning for Biomarker Discovery with Moderated Statistics

This package facilitates the discovery of biomarkers from biological sequencing data (e.g., microarrays, RNA-seq) based on the associations of potential biomarkers with exposure and outcome variables by implementing an estimation procedure that combines a generalization of the moderated t-statistic with asymptotically linear statistical parameters estimated via targeted minimum loss-based estimation (TMLE).

Getting started

Package details

AuthorNima Hejazi [aut, cre, cph]
Bioconductor views DifferentialExpression GeneExpression Microarray RNASeq Sequencing
MaintainerNima Hejazi <[email protected]>
Licensefile LICENSE
Version1.1.0
URL https://github.com/nhejazi/biotmle
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("Bioconductor-mirror/biotmle")
Bioconductor-mirror/biotmle documentation built on May 10, 2017, 12:02 a.m.