API for Bioconductor-mirror/biovizBase
Basic graphic utilities for visualization of genomic data.

Global functions
AAAlphabetColor Source code
AminoAcidCodeColor Source code
CRC Man page
DNAAlphabetColor Source code
DNABasesColor Source code
DNABasesNColor Source code
GCcontent Man page Source code
IUPACCodeMapColor Source code
RNAAlphabetColor Source code
RNABasesColor Source code
RNABasesNColor Source code
addStepping Man page
addStepping,GenomicRanges-method Man page
biovizBase Man page
biovizBase-package Man page Man page
blind.pal.info Man page
brewer.pal.blind.info Man page
centroidPos Source code
check.integer Source code
checkFacetsRestrict Source code
colorBlindSafePal Man page Source code
colorschemes.num Source code
containLetters Man page Source code
crc.gr Man page
crc1.GeRL Man page Man page
crunch Man page
crunch,BamFile-method Man page
crunch,EnsDb-method Man page
crunch,GAlignments-method Man page
crunch,TxDb-method Man page
cytobandColor Source code
darned_hg19_subset500 Man page Man page
dichromat.pal.blind.info Man page
estimateCoverage Man page
estimateCoverage,BamFile-method Man page
fetch Source code
flatGrl Man page Source code
genBlindPalInfo Man page Source code
genBrewerBlindPalInfo Man page Source code
genDichromatPalInfo Man page Source code
genGenesymbolTable Source code
genSymbols Source code
genesymbol Man page Man page
getBioColor Man page Source code
getCytobandColor Source code
getFormalNames Man page Source code
getGaps Man page
getGaps,GRanges-method Man page
getIdeoGR Man page Source code
getIdeogram Man page Source code
getScale Man page Source code
getXLab Man page
getXLab,GAlignments-method Man page
getXLab,GRanges-method Man page
getXLab,GRangesList-method Man page
getXLab-method Man page
getXScale Man page
getXScale,GRanges-method Man page
getYLab Man page
getYLab,TxDb-method Man page
ggplot2_is.constant Source code
ggplot2_is_calculated_aes Source code
ggplot2_strip_dots Source code
hg19Ideogram Man page Man page
hg19IdeogramCyto Man page Man page
hg19sub Man page
ideo Man page
ideoCyto Man page
isFacetByOnlySeq Source code
isIdeogram Man page Source code
isJunctionRead Man page Source code
isMatchedWithModel Man page Source code
isSimpleIdeogram Man page Source code
is_coord_genome Man page Source code
is_coord_truncate_gaps Man page Source code
is_homo Source code
maxGap Man page
maxGap,GenomicRanges-method Man page
mold Man page
mold,ExpressionSet-method Man page
mold,GRanges-method Man page
mold,GRangesList-method Man page
mold,IRanges-method Man page
mold,RangedSummarizedExperiment-method Man page
mold,Rle-method Man page
mold,RleList-method Man page
mold,Seqinfo-method Man page
mold,SummarizedExperiment-method Man page
mold,VRanges-method Man page
mold,Views-method Man page
mold,eSet-method Man page
mold,matrix-method Man page
mut.gr Man page
newDataAfterFacetByGr Source code
onLoad Source code
parseArgsForAes Man page Source code
parseArgsForNonAes Man page Source code
pileupAsGRanges Man page Source code
pileupGRangesAsVariantTable Man page Source code
plotColorLegend Man page Source code
pspanGR Source code
rectifySeqlevelsStyle Source code
reduceNtruncate Source code
rescaleGr Source code
scanBamGRanges Source code
showColor Man page Source code
show_col2 Source code
shrinkageFun Man page
shrinkageFun,GenomicRanges-method Man page
shrinkageFun,IRanges-method Man page
splitByFacets Man page
splitByFacets,GRanges,GRanges-method Man page
splitByFacets,GRanges,NULL-method Man page
splitByFacets,GRanges,formula-method Man page
splitByFacets,GRanges,missing-method Man page
strandColor Source code
strip_formula_dots Man page Source code
subsetArgsByFormals Man page Source code
transformDfToGr Man page Source code
transformGRangesForEvenSpace Man page Source code
transformSeqinfo Source code
transformToArch Man page
transformToArch,GRanges-method Man page
transformToBarInCircle Man page Source code
transformToCircle Man page Source code
transformToDf Man page
transformToDf,GRanges-method Man page
transformToDf-method Man page
transformToEven Source code
transformToGenome Man page
transformToGenome,GRanges-method Man page
transformToGenome,GRangesList-method Man page
transformToLinkInCircle Man page Source code
transformToRectInCircle Man page Source code
transformToSegInCircle Man page Source code
transformToSegInCircle2 Source code
Bioconductor-mirror/biovizBase documentation built on June 1, 2017, 5:21 a.m.