Man pages for Bioconductor-mirror/blima
Tools for the preprocessing and analysis of the Illumina microarrays on the detector (bead) level

aggregateAndPreprocessAggregate data
bacgroundCorrectData background correction.
bacgroundCorrectSingleArrayData background correction.
backgroundChannelSubtractBackground channel subtraction
backgroundChannelSubtractSingleArrayBackground channel subtraction
blima-packagePackage for the preprocessing and analysis of the Illumina...
channelExistsIntegrityWithLogicalVectorListInternal function
checkIntegrityInternal function
checkIntegrityLogicalInternal function
checkIntegrityOfListOfBeadLevelDataObjectsInternal function
checkIntegrityOfSingleBeadLevelDataObjectInternal function
chipArrayStatisticsStatistics of beadLevelData
createSummarizedMatrixSummarized value matrix.
doActionInternal function
doProbeTTestsT-test for probe level data.
doTTestsT-test for bead (detector) level data.
filterBgBg correct vector
getNextVectorSupport probe and beadl level testing.
initMeanDistributioninitMeanDistribution
insertColumnInternal function to support chipArrayStatistics
interpolateSortedVectorInterpolate sorted vector
interpolateSortedVectorRcpp_interpolateSortedVectorRcpp
log2TransformPositiveLog2 transform of numbers >1.
meanDistributionProduce sorted double vector with mean distribution.
nonParametricEstimatorINTERNAL FUNCTION Xie background correct.
nonPositiveCorrectCorrect non positive
nonPositiveCorrectSingleArrayCorrect non positive
numberOfDistributionElementsInternal
performXieCorrectionINTERNAL FUNCTION Xie background correct.
plotBackgroundImageAfterCorrectionPlot background image after correction
plotBackgroundImageBeforeCorrectionPlot background image before correction
quantileNormalizeBead level quantile normalization.
readToVectorSupport doTTests function.
selectedChannelTransformChannel transformation
selectedChannelTransformSingleArrayChannel transformation
singleArrayNormalizeBead level quantile normalization.
singleChannelExistsIntegrityWithLogicalVectorInternal function
singleCheckIntegrityLogicalVectorInternal function
singleNumberOfDistributionElementsInternal
updateMeanDistributionupdateMeanDistribution
varianceBeadStabiliseBead level VST.
varianceBeadStabiliseSingleArrayBead level VST.
vstFromLumiFunction from LGPL lumi package 2.16.0
writeBackgroundImagesWrite Background Images
xieBacgroundCorrectXie background correct.
xieBacgroundCorrectSingleArrayINTERNAL FUNCTION Xie background correct.
Bioconductor-mirror/blima documentation built on June 1, 2017, 5:22 a.m.