API for Bioconductor-mirror/canceR
A Graphical User Interface for accessing and modeling the Cancer Genomics Data of MSKCC.

Global functions
ClinicalData Man page
GSEA Man page Source code
GSEA.Analyze.Sets Man page Source code
GSEA.ConsPlot Man page Source code
GSEA.EnrichmentScore Man page Source code
GSEA.EnrichmentScore2 Man page Source code
GSEA.Gct2Frame Man page Source code
GSEA.Gct2Frame2 Man page Source code
GSEA.GeneRanking Man page Source code
GSEA.HeatMapPlot Man page Source code
GSEA.HeatMapPlot2 Man page Source code
GSEA.NormalizeCols Man page Source code
GSEA.NormalizeRows Man page Source code
GSEA.ReadClsFile Man page Source code
GSEA.Res2Frame Man page Source code
GSEA.Threshold Man page Source code
GSEA.VarFilter Man page Source code
GSEA.write.gct Man page Source code
GeneExpMatrix Man page
Match_GeneList_MSigDB Man page Source code
OLD.GSEA.EnrichmentScore Man page Source code
Run.GSEA Man page Source code
about Man page Source code
canceR Man page Source code
canceRHelp Man page
canceR_Vignette Man page
cbind.na Man page Source code
dialogGeneClassifier Man page Source code
dialogMetOption Man page Source code
dialogMut Man page Source code
dialogOptionCircos Man page Source code
dialogOptionGSEAlm Man page Source code
dialogOptionPhenoTest Man page Source code
dialogPlotOption_SkinCor Man page Source code
dialogSamplingGSEA Man page Source code
dialogSelectFiles_GSEA Man page Source code
dialogSpecificMut Man page Source code
dialogSummary_GSEA Man page Source code
dialoggetGeneListMSigDB Man page Source code
displayInTable Man page Source code
getCases Man page Source code
getCasesGenProfs Man page Source code
getCircos Man page Source code
getClinicData_MultipleCases Man page Source code
getClinicalDataMatrix Man page Source code
getCor_ExpCNAMet Man page Source code
getGCTCLSExample Man page Source code
getGCT_CLSfiles Man page Source code
getGSEAlm_Diseases Man page Source code
getGSEAlm_Variables Man page Source code
getGenProfs Man page Source code
getGeneExpMatrix Man page Source code
getGeneList Man page Source code
getGeneListExample Man page Source code
getGeneListFromMSigDB Man page Source code
getGenesClassifier Man page Source code
getGenesTree_MultipleCases Man page Source code
getGenesTree_SingleCase Man page Source code
getInTable Man page Source code
getListProfData Man page Source code
getMSigDB Man page Source code
getMSigDBExample Man page Source code
getMSigDBfile Man page Source code
getMegaProfData Man page Source code
getMetDataMultipleGenes Man page Source code
getMutData Man page Source code
getPhenoTest Man page Source code
getProfilesDataMultipleGenes Man page Source code
getProfilesDataSingleGene Man page Source code
getSpecificMut Man page Source code
getSummaryGSEA Man page Source code
getSurvival Man page Source code
getTextWin Man page Source code
geteSet Man page Source code
modalDialog Man page Source code
myGlobalEnv Man page
plotModel Man page Source code
plot_1Gene_2GenProfs Man page Source code
plot_2Genes_1GenProf Man page Source code
rbind.na Man page Source code
setWorkspace Man page Source code
testCheckedCaseGenProf Man page Source code
Bioconductor-mirror/canceR documentation built on June 1, 2017, 5:24 a.m.