Get cases for selected Studies. The Cases are the descrption of the samples from patients. The samples can be subdivided by the type of assays as, sequencing, CNA, Mutation, Methylation.
a dataframe with cases
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# Create CGDS object cgds<-CGDS("http://www.cbioportal.org/public-portal/") # Get list of cancer studies at server Studies <- getCancerStudies(cgds)[,2] # Get available case lists (collection of samples) for a given cancer study mycancerstudy <- getCancerStudies(cgds)[2,1] mycaselist <- getCaseLists(cgds,mycancerstudy)[1,1] ## Not run: ##getCases() ## End(Not run)
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