Bioconductor-mirror/casper: Characterization of Alternative Splicing based on Paired-End Reads
Version 2.11.0

Infer alternative splicing from paired-end RNA-seq data. The model is based on counting paths across exons, rather than pairwise exon connections, and estimates the fragment size and start distributions non-parametrically, which improves estimation precision.

Getting started

Package details

AuthorDavid Rossell, Camille Stephan-Otto, Manuel Kroiss, Miranda Stobbe, Victor Pena
Bioconductor views DifferentialExpression GeneExpression RNASeq Sequencing Transcription
MaintainerDavid Rossell <[email protected]>
LicenseGPL (>=2)
Version2.11.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("Bioconductor-mirror/casper")
Bioconductor-mirror/casper documentation built on June 1, 2017, 5:26 a.m.