Files in Bioconductor-mirror/casper
Characterization of Alternative Splicing based on Paired-End Reads

DESCRIPTION
NAMESPACE
R/ClassDefinitions.R R/GenericDefs.R R/asymmetryCheck.R R/calcDenovo.R R/calcExp.R R/casperVignettes.R R/checks.R R/createDenovoGenome.R R/denovoExpr.R R/genePlot.R R/getDistrs.R R/getRoc.R R/makeTranscriptDbFromGFF.R R/mergeBatches.R R/mergeExp.R R/modelPrior.R R/pathCounts.R R/probNonEquiv.R R/procBam.R R/procGenome.R R/qqnormGenomeWide.R R/relexprByGene.R R/rmShortInserts.R R/simMultSamples.R R/simPost.R R/simReads.R R/splitGenomeByLength.R R/truncnorm.R R/wrapDenovo.R R/wrapKnown.R
data/K562.r1l1.RData
data/datalist
data/distrsGSE37704.RData
data/hg19DB.RData
inst/CITATION
inst/doc/DesignRNASeq.pdf man/K562.r1l1.Rd man/annotatedGenome-class.Rd man/asymmetryCheck.Rd man/calcDenovo.Rd man/calcExp.Rd man/denovoExpr.Rd man/denovoGeneExpr-class.Rd man/denovoGenomeExpr-class.Rd man/distrsGSE37704.Rd man/genePlot.Rd man/getDistrs.Rd man/getIsland.Rd man/getNreads.Rd man/getReads.Rd man/getRoc.Rd man/hg19DB.Rd man/mergeBatches.Rd man/mergeExp.Rd man/modelPrior.Rd man/modelPriorAS-class.Rd man/pathCounts-class.Rd man/pathCounts.Rd man/plot-methods.Rd man/plotExpr.Rd man/plotPriorAS.Rd man/probNonEquiv.Rd man/procBam-class.Rd man/procBam.Rd man/procGenome.Rd man/qqnormGenomeWide.Rd man/quantileNorm.Rd man/relexprByGene.Rd man/rmShortInserts.Rd man/simMAE.Rd man/simMAEcheck.Rd man/simMultSamples.Rd man/simReads.Rd man/simulatedSamples-class.Rd man/splitGenomeByLength.Rd man/subsetGenome.Rd man/transcripts.Rd man/txLength-methods.Rd man/wrapDenovo.Rd man/wrapKnown.Rd
src/casper.cpp
src/casper.h
src/cppmemory.h
src/cstat.cpp
src/cstat.h
src/dataframe.cpp
src/dataframe.h
src/discretedf.cpp
src/discretedf.h
src/dropVariant.cpp
src/dropVariant.h
src/exon.cpp
src/exon.h
src/fragFunc.c
src/fragFunc.h
src/fragment.cpp
src/fragment.h
src/functions.c
src/functions.h
src/hash.c
src/hash.h
src/header.h
src/join_exons.c
src/makeIslands.c
src/model.cpp
src/model.h
src/model_cmp.cpp
src/model_cmp.h
src/pathCounts.c
src/procBam.c
src/rcasper.cpp
src/rcasper.h
src/seppel.cpp
src/seppel.h
src/simReads.c
src/simReadsfunc.c
src/simReadsfunc.h
src/smartmodeldist.cpp
src/stdafx.h
src/symbols.rds
src/targetver.h
src/uniqQname.c
src/variant.cpp
src/variant.h
src/variant_cmp.cpp
src/variant_cmp.h
vignettes/auto/casper.el
vignettes/casper.Rnw
vignettes/references.bib
Bioconductor-mirror/casper documentation built on June 1, 2017, 5:26 a.m.