API for Bioconductor-mirror/cellHTS2
Analysis of cell-based screens - revised version of cellHTS

Global functions
Bscore Man page Source code
Data Man page
Data,cellHTS-method Man page
Data<- Man page
Data<-,cellHTS,array-method Man page
KcViab Man page
KcViabSmall Man page
NPI Source code
OPI Source code
OPIScore Source code
POC Source code
QMbyPlate Source code
QMexperiment Source code
ROC Man page
ROC,cellHTS-method Man page
ROC-class Man page
addTooltip Source code
adjustVariance Source code
adjustVariancebyBatch Source code
adjustVariancebyExperiment Source code
adjustVariancebyPlate Source code
annotate Man page
annotate,cellHTS-method Man page
barplotWithImageMap Source code
batch Man page
batch,cellHTS-method Man page
batch<- Man page
batch<-,cellHTS,data.frame-method Man page
bdgpbiomart Man page
boxplotwithNA Source code
buildCellHTS2 Man page Source code
cellHTS Man page
cellHTS-class Man page
cellHTS2 Man page
cellHTS2-package Man page
cellHTSlistVerification Source code
chanCorrFun Source code
checkClass Source code
checkColumns Source code
checkControls Source code
checkControls2W Source code
checkMandatoryColumns Source code
checkPosControls Source code
chtsGetSetting Source code
chtsImage Source code
chtsImageStack Source code
chtsModule Source code
chtsSetSetting Source code
class.cellHTS Man page
coerce,chtsImage,data.frame-method Man page
colors4Controls Source code
compare2cellHTS Man page
compare2cellHTS,cellHTS,cellHTS-method Man page
configurationAsScreenPlot Man page Source code
configure Man page
configure,cellHTS-method Man page
controlsBasedNormalization Source code
controlsplot Source code
convertOldCellHTS Man page Source code
convertWellCoordinates Man page Source code
corrFun Source code
createOutputFolder Source code
createProgressList Source code
ctrlsPerPlate Source code
dataframeOutput Source code
densityplot Source code
dualCh Man page
dynRange Source code
emptyOrNA Source code
envisionPlateReader Source code
equalOrZero Source code
evalGseaModule Source code
extractTag Source code
findControls Source code
funOperator Source code
geneAnno Man page
geneAnno,cellHTS-method Man page
getArrayCorrectWellAnno Source code
getConfiguration Source code
getControlsPositions Source code
getDefinition Source code
getDynamicRange Man page Source code
getEnVisionCrosstalkCorrectedData Man page Source code
getEnVisionRawData Man page Source code
getMeasureRepAgreement Man page Source code
getNrPlateColRow Source code
getPlist Source code
getProInfo Source code
getScreendesc Source code
getScreenlog Source code
getSettings Man page Source code
getTopTable Man page Source code
getZfactor Man page Source code
gseaModule Man page Source code
guid Source code
handleOneGroup Source code
histFun Source code
imageScreen Man page Source code
imageScreenArgsVerification Source code
initialize,cellHTS-method Man page
intensFun Source code
intensityFiles Man page
intensityFiles,cellHTS-method Man page
isUpToDate Source code
length,GeneSet-method Man page
lines,ROC-method Man page Man page
maFun Source code
makePlot Source code
meanSdPlot Man page
meanSdPlot,cellHTS-method Man page
myApplyByCategory Source code
myCall Source code
myImageMap Source code
myUpdateProgress Source code
name Man page
name,cellHTS-method Man page
name<- Man page
name<-,cellHTS,character-method Man page
nbatch Man page
nbatch,cellHTS-method Man page
normalizePlates Man page Source code
oldKcViabSmall Man page
onAttach Source code
onLoad Source code
oneRowPerId Man page Source code
optimalDevDims Source code
parseGlossaryXML Source code
parseLetNum Source code
pdim Man page
pdim,cellHTS-method Man page Man page
perCatPage Source code
perPlateScaling Source code
plate Man page
plate,cellHTS-method Man page
plateConf Man page
plateConf,cellHTS-method Man page
plateEffects Man page
plateEffects,cellHTS-method Man page
plateList Man page
plateList,cellHTS-method Man page
plateListClass Source code
plot,ROC,missing-method Man page Man page
plot,ROC-method Man page Man page
plotPlateArgsVerification Source code
plotSpatialEffects Man page Source code
position Man page
position,cellHTS-method Man page
readHTAnalystData Man page Source code
readHTAnalystOneReplicate Source code
readPlateList Man page Source code
rsa Man page Source code
saveHtmlGlossary Source code
scoreReplicates Man page Source code
scoreReplicatesByNPI Source code
scoreReplicatesByzscore Source code
scores2calls Man page Source code
screenDesc Man page
screenDesc,cellHTS-method Man page
screenImageMap Source code
screenLog Man page
screenLog,cellHTS-method Man page
sdFun Source code
setDefinition Source code
setSettings Man page Source code
settings Man page
show,ROC-method Man page
show,cellHTS-method Man page
spatialNormalization Man page Source code
standardizeWellID Source code
state Man page
state,cellHTS-method Man page
summarizeChannels Man page Source code
summarizeReplicates Man page Source code
tableOutput Source code
tableOutputWithHeaderRows Source code
templateDescriptionFile Man page Source code
updateCellHTS Man page Source code
validityCellHTS Source code
validityROC Source code
well Man page
well,cellHTS-method Man page
wellAnno Man page
wellAnno,cellHTS-method Man page
write.tabdel Man page Source code
writeHtml.experimentQC Source code
writeHtml.gseaModule Source code
writeHtml.header Source code
writeHtml.mainpage Source code
writeHtml.plateConf Source code
writeHtml.plateList Source code
writeHtml.screenDescription Source code
writeHtml.screenResults Source code
writeHtml.screenScript Source code
writeHtml.screenSummary Source code
writeHtml.tab Source code
writeHtml.tabCollection Source code
writeHtml.trailer Source code
writeImgRef Source code
writeIntensityFiles Source code
writeQCTable Source code
writeReport Man page Source code
writeTab Man page
writeTab,cellHTS-method Man page
zfacFun Source code
Bioconductor-mirror/cellHTS2 documentation built on June 1, 2017, 5:28 a.m.