Bioconductor-mirror/cellTree: Inference and visualisation of Single-Cell RNA-seq data as a hierarchical tree structure
Version 1.7.0

This packages computes a Latent Dirichlet Allocation (LDA) model of single-cell RNA-seq data and builds a compact tree modelling the relationship between individual cells over time or space.

Getting started

Package details

AuthorDavid duVerle [aut, cre], Koji Tsuda [aut]
Bioconductor views BiomedicalInformatics CellBiology Clustering FunctionalGenomics GO GeneExpression GeneSetEnrichment GraphAndNetwork Microarray RNASeq Sequencing SystemsBiology TimeCourse Visualization
MaintainerDavid duVerle <dave@cb.k.u-tokyo.ac.jp>
LicenseArtistic-2.0
Version1.7.0
URL http://tsudalab.org
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("Bioconductor-mirror/cellTree")
Bioconductor-mirror/cellTree documentation built on June 1, 2017, 5:28 a.m.