API for Bioconductor-mirror/charm
Analysis of DNA methylation data from CHARM microarrays

Global functions
Max Source code
Min Source code
Rug Source code
SQNff Source code
arrayImage Source code
arrayPlot Source code
as.image Source code
as.image.fast Source code
asff Source code
bgAdjust Man page Source code
bgAdjustAtom Source code
bgAdjustParameters Source code
checkBreakpoint Source code
cloneFeatureSet Source code
clusterMaker Man page Source code
cmdsplot Man page Source code
comp Source code
controlQC Man page Source code
countGC Man page Source code
countSeq Source code
counts Source code
cpgdensity Man page Source code
diffAmpAdjustGC Source code
diffAmpEstGC Source code
dmrFdr Man page Source code
dmrFind Man page Source code
dmrFinder Man page Source code
dmrPlot Man page Source code
dmrPlot_paired Source code
dmrPlot_unpaired Source code
dosmooth Source code
dynamicRange Source code
edge.qvalue Source code
err.msg Source code
get.DD Source code
get.smooth Source code
get.tog Source code
get.tt Source code
get.tt.paired Source code
getBlockSize Source code
getControlIndex Man page Source code
getMap Source code
getSegments Source code
ilogit Source code
lm_fit Source code
loessPns Source code
logit Source code
logmethParameters Source code
maxDensity Man page Source code
methPercent Man page Source code
methp Man page Source code
mix.qn Source code
monotonic Source code
myfilter Source code
myfilterse Source code
mypar Source code
normControlBg Source code
normalizeBetweenSamples Man page Source code
normalizeLoess Source code
normalizeLoessAtom Source code
normalizeWithinSamples Man page Source code
onAttach Source code
plotDMRs Man page Source code
plotDensity Man page Source code
plotDensityMat Source code
plotRegions Man page Source code
plot_CpG Source code
pmQuality Man page Source code
pmvsbg Source code
predictLoess Source code
prettyTime Source code
qcReport Man page Source code
qnToTargetAtom Source code
qval Man page Source code
readCharm Man page Source code
regionFilter Source code
regionFinder Source code
regionMatch Man page Source code
regionPlot Man page Source code
regionPlot_paired Source code
regionPlot_unpaired Source code
remove_gc_effect Source code
reshapePd Source code
rowCor Source code
rowMads Source code
scaleSamples Source code
scaleSamplesAtom Source code
smoothTile Source code
spatialAdjust Man page Source code
spatialAdjustAtom Source code
spatialAdjustVec Source code
validatePd Man page Source code
vec2array Source code
Bioconductor-mirror/charm documentation built on June 1, 2017, 5:29 a.m.