Files in Bioconductor-mirror/chimera
A package for secondary analysis of fusion products

DESCRIPTION
NAMESPACE
NEWS
R/AllClasses.R R/AllGenerics.R R/AllUtilities.R R/addGA.R R/addRNA.R R/chimeraSeqs.R R/defuseTPTN.R R/denovoFusionCheck.R R/fusionData.R R/fusionGA.R R/fusionGRL.R R/fusionPeptides.R R/fusionRNA.R R/importFusionData.R R/is.fSet.R R/plotCoverage.R R/show.R R/star.R R/subread.R R/tophat.R
inst/CITATION
inst/examples/Edgreen_fm.txt
inst/examples/Edgren_cs.txt
inst/examples/Edgren_df.tsv
inst/examples/Edgren_true.positives.txt
inst/examples/SULF2_ARFGEF2.fa
inst/examples/defuse_TP_FP.txt
inst/examples/edgren.stat.detection.txt
inst/examples/fset_ARFGEF2-SULF2.rda
inst/examples/mcf7.FMFusionReport
inst/examples/mcf7_sample_1.fq
inst/examples/mcf7_sample_2.fq
inst/examples/mcf7_trs_accepted_hits.bam
inst/examples/uc002xtx.4-272_uc010zyd.2-988.fa
inst/examples/uc002xtx.4-272_uc010zyd.2-988_R1.fastq
inst/examples/uc002xtx.4-272_uc010zyd.2-988_R2.fastq
inst/examples/uc002xvp.1-243_uc002iyu.4-1031.fa
inst/examples/uc002xvp.1-243_uc002iyu.4-1031_R1.fastq
inst/examples/uc002xvp.1-243_uc002iyu.4-1031_R2.fastq
man/MHmakeRandomString.Rd man/bam2fastq.Rd man/breakpointOverlaps.Rd man/chimera-package.Rd man/chimeraSeqSet.Rd man/chimeraSeqs.Rd man/class.fSet.Rd man/defuseTPTN.Rd man/filterList.Rd man/filterSamReads.Rd man/fusionName.Rd man/fusionPeptides.Rd man/gapfillerInstallation.Rd man/gapfillerRun.Rd man/gapfillerWrap.Rd man/importFusionData.Rd man/is.fSet.Rd man/newfSet.Rd man/oncofuseInstallation.Rd man/oncofuseRun.Rd man/picardInstallation.Rd man/plotCoverage.Rd man/prettyPrint.Rd man/removingErrorLine.Rd man/starInstallation.Rd man/starReads.Rd man/starRun.Rd man/subreadRun.Rd man/supportingReads.Rd man/tophatInstallation.Rd man/tophatRun.Rd man/validateSamFile.Rd
src/StarParser.cpp
src/general.h
vignettes/chimera.Rnw
Bioconductor-mirror/chimera documentation built on June 1, 2017, 5:30 a.m.