The function uses the file defuse_TP_FP.txt located in the examples folder of chimera to generate a list of fSet object encompassing 60 TP fusions and 61 TN fusions extracted from supplementary table 8 of the deFuse paper McPherson et al. (2011) PLoS Comput Biol 7(5): e1001138. The fset object can be used to evaluate the efficacy of filtering approaches available in chimera package.
An list of fSet objects: Experimentally validated fusions 1-60, fish validated fusions 1-14, false fusions 61-121.
Raffaele A Calogero
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