defuseTPTN: A function that genererate a list of fSet objects encopassing...

Description Usage Value Author(s) Examples

View source: R/defuseTPTN.R

Description

The function uses the file defuse_TP_FP.txt located in the examples folder of chimera to generate a list of fSet object encompassing 60 TP fusions and 61 TN fusions extracted from supplementary table 8 of the deFuse paper McPherson et al. (2011) PLoS Comput Biol 7(5): e1001138. The fset object can be used to evaluate the efficacy of filtering approaches available in chimera package.

Usage

1

Value

An list of fSet objects: Experimentally validated fusions 1-60, fish validated fusions 1-14, false fusions 61-121.

Author(s)

Raffaele A Calogero

Examples

1
tptn <-defuseTPTN()

Bioconductor-mirror/chimera documentation built on June 1, 2017, 5:30 a.m.