starReads: A function to extract reads info from STAR fusion output

Description Usage Arguments Author(s) Examples

View source: R/AllUtilities.R

Description

A function producing a GRangeList for the reads information, involved in a fusion event.

Usage

1
starReads(fusion.report, parallel=FALSE)

Arguments

fusion.report

STAR fusion output file

parallel

option to run a parallel version of the function, default FALSE

Author(s)

Raffaele A Calogero

Examples

1
#tmp <- starReads("Chimeric.out.junction", parallel=FALSE)

Bioconductor-mirror/chimera documentation built on June 1, 2017, 5:30 a.m.