API for Bioconductor-mirror/chimeraviz
Visualization tools for gene fusions

Global functions
.fusionsToGeneLabelData Man page
.fusionsToLinkData Man page
.scaleListToInterval Man page
Fusion Man page
Fusion-class Man page
PartnerGene Man page
PartnerGene-class Man page
addFusionReadsAlignment Man page Source code
checkThatBreakpointsAreWithinTranscripts Source code
checkThatTranscriptsHaveBreakpointExons Source code
chimeraviz Man page
chimeraviz-internals-fusionsToGeneLabelData Man page
chimeraviz-internals-fusionsToLinkData Man page
chimeraviz-internals-scaleListToInterval Man page
chimeraviz-package Man page
createFusionReport Man page Source code
decideTranscriptCategory Man page Source code
downShift Man page Source code
downstreamPartnerGene Man page
downstreamPartnerGene,Fusion-method Man page
downstreamPartnerGene<- Man page
downstreamPartnerGene<-,Fusion-method Man page
fetchReadsFromFastq Man page Source code
fusionSpanningReadsCount Man page
fusionSpanningReadsCount,Fusion-method Man page
fusionSplitReadsCount Man page
fusionSplitReadsCount,Fusion-method Man page
fusionToDataFrame Man page Source code
fusionsToGeneLabelData Source code
fusionsToLinkData Source code
getEnsemblIds Man page Source code
getFusionByChromosome Man page Source code
getFusionByGeneName Man page Source code
getFusionById Man page Source code
getTranscriptsEnsembldb Man page Source code
getTranscriptsIfNotThere Source code
importDefuse Man page Source code
importEricscript Man page Source code
importFunctionNonUCSC Man page Source code
importFusioncatcher Man page Source code
importFusionmap Man page Source code
importInfusion Man page Source code
importJaffa Man page Source code
importPrada Man page Source code
importSoapfuse Man page Source code
importStarfusion Man page Source code
is.nucleotideAmount.valid Source code
partnerGeneEnsemblId Man page
partnerGeneEnsemblId,PartnerGene-method Man page
partnerGeneEnsemblId<- Man page
partnerGeneEnsemblId<-,PartnerGene-method Man page
partnerGeneJunctionSequence Man page
partnerGeneJunctionSequence,PartnerGene-method Man page
plotCircle Man page Source code
plotFusion Man page Man page Man page Source code
plotFusionReads Man page Source code
plotFusionSeparate Man page Source code
plotFusionTogether Man page Source code
plotFusionTranscript Man page Source code
plotFusionTranscriptWithProteinDomain Man page Source code
plotFusionTranscriptsGraph Man page Source code
plotTranscripts Man page Source code
raw_Homo_sapiens.GRCh37.74 Man page
raw_cytobandhg19 Man page
raw_cytobandhg38 Man page
raw_defuse Man page
raw_ericscript Man page
raw_fusion5267proteindomains Man page
raw_fusion5267reads Man page
raw_fusion5267readsBedGraph Man page
raw_fusioncatcher Man page
raw_fusionmap Man page
raw_infusion Man page
raw_jaffa Man page
raw_prada Man page
raw_soapfuse Man page
raw_starfusion Man page
s.bamfile.valid Source code
s.bedfile.valid Source code
s.bedgraphfile.valid Source code
s.character.parameter.valid Source code
s.edb.valid Source code
s.either.bamfile.or.bedgraphfile.valid Source code
s.fusion.valid Source code
s.parameter.boolean Source code
s.whichTranscripts.valid Source code
s.ylim.valid Source code
scaleListToInterval Source code
selectTranscript Man page Source code
show,Fusion-method Man page
show,PartnerGene-method Man page
splitOnUtrAndAddFeature Man page Source code
upstreamPartnerGene Man page
upstreamPartnerGene,Fusion-method Man page
upstreamPartnerGene<- Man page
upstreamPartnerGene<-,Fusion-method Man page
validatePlotCircleParams Source code
validatePlotFusionParams Source code
validatePlotFusionReadsParams Source code
validatePlotFusionTranscriptParams Source code
validatePlotFusionTranscriptWithProteinDomainParams Source code
validatePlotFusionTranscriptsGraphParams Source code
validatePlotFusionTranscriptsParams Source code
writeFusionReference Man page Source code
Bioconductor-mirror/chimeraviz documentation built on June 7, 2017, 2:07 p.m.