API for Bioconductor-mirror/chipenrich
Gene Set Enrichment For ChIP-seq Peak Data

Global functions
assign_peak_segments Man page Source code
assign_peaks Man page Source code
avg_binned_coverage Source code
avg_binned_numpeaks Source code
avg_binned_peak Source code
broadenrich Man page Source code
calc_approx_weights Source code
calc_peak_gene_overlap Man page Source code
calc_weights_chipenrich Source code
calc_weights_polyenrich Source code
chipenrich Man page Source code
chipenrich_package Man page
chipenrich_package-package Man page
filter_genesets Man page Source code
genome_to_organism Man page Source code
genome_to_orgdb Man page Source code
get_test_method Man page Source code
load_peaks Man page Source code
num_peaks_per_gene Man page Source code
peak_nearest_tss Source code
plot_chipenrich_spline Man page Source code Source code
plot_dist_to_tss Man page Source code Source code
plot_gene_coverage Man page Source code Source code
plot_polyenrich_spline Man page Source code Source code
polyenrich Man page Source code
post_process_enrichments Man page Source code
postprocess_peak_grs Man page Source code
randomize_ldef_bylength Source code
randomize_ldef_bylocation Source code
randomize_ldef_complete Source code
randomize_ppg_all Source code
randomize_ppg_length Source code
read_bed Man page Source code
read_geneset Man page Source code
read_ldef Man page Source code
read_mappa Man page Source code
recode_peaks Man page Source code
reset_ncores_for_windows Man page Source code
setup_genesets Man page Source code
setup_locusdef Man page Source code
setup_mappa Man page Source code
single_approx Source code
single_broadenrich Source code
single_chipenrich Source code
single_chipenrich_slow Source code
single_polyenrich Source code
single_polyenrich_slow Source code
supported_genesets Man page Source code
supported_genomes Man page Source code
supported_locusdefs Man page Source code
supported_methods Man page Source code
supported_read_lengths Man page Source code
test_approx Source code
test_binomial Source code
test_broadenrich Source code
test_broadenrich_splineless Source code
test_chipenrich Source code
test_chipenrich_slow Source code
test_fisher_exact Source code
test_polyenrich Source code
test_polyenrich_slow Source code
Bioconductor-mirror/chipenrich documentation built on June 1, 2017, 5:31 a.m.