|chipseqFilter||Filtering ChIP-seq reads|
|coverageplot||Plot coverage on a small interval.|
|cstest||A test ChIP-Seq dataset|
|diffPeakSummary||A function to identify and produce summary statistics for...|
|estimate.mean.fraglen||Estimate summaries of the distribution of fragment lengths in...|
|islandDepthPlot||Plot island depth distribution|
|laneSubsample||Subsample short read alignment locations|
|peakCutoff||Calculate a peak cutoff|
|peakSummary-methods||Summarizing peak sets|
|subsetSummary||Compute summaries for cumulative subsets of a short-read data...|
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