API for Bioconductor-mirror/chroGPS
chroGPS: visualizing the epigenome

Global functions
addVar Man page Source code
adjustPeaks Man page
adjustPeaks,GRangesList-method Man page
adjustPeaks-methods Man page
as.matrix,distGPS-method Man page
avgdistpair Source code
avgdistpair.old Source code
boostMDS Man page Source code
changewidth Source code
chisqdist Source code
chisqdist2 Source code
clusGPS Man page
clusGPS,distGPS,mds-method Man page
clusGPS-class Man page
clusGPS-method Man page
clusGPS-methods Man page
clusNames Man page
clusNames,clusGPS-method Man page
clusOverlap Source code
clusterID Man page
clusterID,clusGPS-method Man page
combs Source code
contour2dDP Man page Source code
d Man page
d2 Man page
d3 Man page
distGPS Man page
distGPS,GRangesList-method Man page
distGPS,data.frame-method Man page
distGPS,matrix-method Man page
distGPS-class Man page
distGPS-methods Man page
domainDist Man page Source code
geneSetGPS Man page
geneSetGPS,data.frame,mds,character-method Man page
geneSetGPS,matrix,mds,character-method Man page
geneSetGPS-methods Man page
getAttributeField Source code
getPoints Man page
getPoints,mds-method Man page
getR2 Man page
getR2,mds-method Man page
getStress Man page
getStress,mds-method Man page
getURL Man page Source code
getmodEncodeBS Source code
gff2RDList Man page Source code
gffRead Source code
gps2xgmml Man page
gps2xgmml,mds,ANY-method Man page
gps2xgmml,mds-method Man page
hclust-class Man page
is.adj Man page
is.adj,mds-method Man page
mds Man page
mds,distGPS,mds-method Man page
mds,distGPS,missing-method Man page
mds,splitDistGPS,missing-method Man page
mds-class Man page
mds-methods Man page
mergeClusters Man page
mergeClusters,clusGPS-method Man page
mergeClusters,list-method Man page
mergeClusters-methods Man page
mergeMDS Source code
normCoords Source code
pden.adjust Source code
plot,clusGPS,ANY-method Man page
plot,clusGPS-method Man page
plot,mds,ANY-method Man page
plot,mds-method Man page
plotContour Man page Source code
preCalcGrid Source code
premergeClusters Source code
procrustes Source code
procrustesAdj Man page
procrustesAdj,mds,distGPS-method Man page
procrustesAdj-methods Man page
profileClusters Man page Source code
rdldist Source code
realtanipair Source code
realtanipair.old Source code
s2 Man page
s2.tab Man page
s2.wt Man page
s2Seq Man page
s2SeqNames Man page
s2names Man page
show,clusGPS-method Man page
show,distGPS-method Man page
show,mds-method Man page
show,splitDistGPS-method Man page
splidDistGPS-class Man page
splitDistGPS,data.frame-method Man page
splitDistGPS,distGPS-method Man page
splitDistGPS,matrix-method Man page
splitDistGPS-class Man page
splitMDS Source code
stress Source code
tabClusters Man page
tabClusters,clusGPS-method Man page
toydists Man page
uniqueCount Man page Source code
xgmml2d Source code
xgmml3d Source code
Bioconductor-mirror/chroGPS documentation built on June 1, 2017, 5:32 a.m.