|classifyPlacements||Taxonomic classification by phylogenetic placement.|
|clstutils-package||Sequence based classification and selection of reference...|
|findOutliers||Identify outlier objects given a square distance matrix.|
|hide/placeData||Read output file produced by 'pplacer'|
|maxDists||Select a maximally diverse set of items given a distance...|
|prettyTree||Draw an annotated phylogenetic tree.|
|refpkgContents||Read the contents of a collection of reference sequences...|
|seqdat||Annotation for the Enterococcus sequence data set.|
|seqs||Enterococcus sequence data set.|
|taxonomyFromRefpkg||Extract taxonomic information from a refpkg.|
|treeDists||Provide objects for determining distances among nodes of a...|
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