API for Bioconductor-mirror/clusterExperiment
Compare Clusterings for Single-Cell Sequencing

Global functions
ClusterExperiment Man page
ClusterExperiment-class Man page
ClusterExperiment-methods Man page
ClusterFunction Man page
ClusterFunction-class Man page
ClusterFunction-methods Man page
EstNull.func Source code
RSEC Man page
RSEC,ClusterExperiment-method Man page Man page
RSEC,SummarizedExperiment-method Man page
RSEC,data.frame-method Man page
RSEC,matrix-method Man page
RSEC-methods Man page
TypeIntoIndices Source code
[,ClusterExperiment,ANY,ANY,ANY-method Man page
[,ClusterExperiment,ANY,character,ANY-method Man page
[,ClusterExperiment,ANY,logical,ANY-method Man page
[,ClusterExperiment,ANY,numeric,ANY-method Man page
addBackSEInfo Source code
addClusters Man page
addClusters,ClusterExperiment,ClusterExperiment-method Man page
addClusters,ClusterExperiment,matrix-method Man page
addClusters,ClusterExperiment,numeric-method Man page
addNewResult Source code
addPrefixToClusterNames Source code
algorithmType Man page
algorithmType,ClusterFunction-method Man page
algorithmType,character-method Man page
algorithmType,factor-method Man page
bigPalette Man page Man page
checkAlgType Source code
checkDissFunction Source code
checkHasArgs Source code
checkSubsampleClusterDArgs Source code
checkXDissInput Source code
claraCluster Source code
clusterContrasts Man page
clusterContrasts,ClusterExperiment-method Man page
clusterContrasts,vector-method Man page
clusterExperiment Man page Man page
clusterExperiment,SummarizedExperiment,character-method Man page
clusterExperiment,SummarizedExperiment,factor-method Man page
clusterExperiment,SummarizedExperiment,matrix-method Man page
clusterExperiment,SummarizedExperiment,numeric-method Man page
clusterExperiment,matrix,ANY-method Man page
clusterFunction Man page Man page
clusterFunction,function-method Man page
clusterInfo Man page
clusterInfo,ClusterExperiment-method Man page
clusterLabels Man page
clusterLabels,ClusterExperiment-method Man page
clusterLabels<- Man page
clusterLabels<-,ClusterExperiment,character-method Man page
clusterLegend Man page
clusterLegend,ClusterExperiment-method Man page
clusterLegend<- Man page
clusterLegend<-,ClusterExperiment,list-method Man page
clusterListToVector Source code
clusterMany Man page
clusterMany,ClusterExperiment-method Man page
clusterMany,SummarizedExperiment-method Man page
clusterMany,data.frame-method Man page
clusterMany,list-method Man page
clusterMany,matrix-method Man page
clusterMatrix Man page Man page Man page
clusterMatrix,ClusterExperiment,character-method Man page
clusterMatrix,ClusterExperiment,missing-method Man page
clusterMatrix,ClusterExperiment,numeric-method Man page
clusterMatrixNamed Man page
clusterMatrixNamed,ClusterExperiment-method Man page
clusterSingle Man page
clusterSingle,ClusterExperiment,missing-method Man page
clusterSingle,SummarizedExperiment,missing-method Man page
clusterSingle,matrixOrNULL,matrixOrNULL-method Man page
clusterSingle,matrixOrNULL,missing-method Man page
clusterSingle,missing,matrixOrNULL-method Man page
clusterTrackingPlot Source code
clusterTypes Man page
clusterTypes,ClusterExperiment-method Man page
clusterTypes<- Man page
clusterTypes<-,ClusterExperiment,character-method Man page
clusterVectorToList Source code
clusterWrapper Source code
coClustering Man page
coClustering,ClusterExperiment-method Man page
coClustering<- Man page
coClustering<-,ClusterExperiment,matrix-method Man page
combineMany Man page
combineMany,ClusterExperiment,character-method Man page
combineMany,ClusterExperiment,missing-method Man page
combineMany,ClusterExperiment,numeric-method Man page
combineMany,matrix,missing-method Man page
convertClusterLegend Man page
convertClusterLegend,ClusterExperiment-method Man page
convertClusterListToVector Source code
convertToAheatmap Source code
convertToNum Source code
dendroClusterIndex Man page
dendroClusterIndex,ClusterExperiment-method Man page
epsest.func Source code
genericClassify Source code
getBestFGenes Source code
getBestFeatures Man page
getBestFeatures,ClusterExperiment-method Man page
getBestFeatures,matrix-method Man page
getBuiltInFunction Man page
getBuiltInFunction,character-method Man page
getPassedArgs Source code
getPostProcessingArgs Man page
getPostProcessingArgs,ClusterFunction-method Man page
hammingdist Source code
hier01Cluster Source code
hierKCluster Source code
inputType Man page
inputType,ClusterFunction-method Man page
inputType,character-method Man page
inputType,factor-method Man page
internalFunctionCheck Man page Source code
kmeansClassify Source code
kmeansCluster Source code
kmeansPartitionObject Source code
listBuiltInFunctions Man page Source code
listBuiltInType01 Man page Source code
listBuiltInTypeK Man page Source code
m1_JC Source code
m1_MB Source code
m1_PC Source code
m1_Storey Source code
m1_adjP Source code
m1_locfdr Source code
mainClustering Man page
mainClustering,ClusterFunction-method Man page
mainClustering,character-method Man page
makeBlankData Man page Source code
makeColors Source code
makeDataArgs Source code
makeDendrogram Man page
makeDendrogram,ClusterExperiment-method Man page
makeDendrogram,matrix-method Man page
makeDiss Source code
makeIntegerClusters Source code
makePhylobaseTree Source code
mergeClusters Man page
mergeClusters,ClusterExperiment-method Man page
mergeClusters,matrix-method Man page
methodFormals Source code
myTryFunc Source code
nClusters Man page
nClusters,ClusterExperiment-method Man page
nFeatures Man page
nFeatures,ClusterExperiment-method Man page
nSamples Man page
nSamples,ClusterExperiment-method Man page
orderByAlpha Source code
orderSamples Man page
orderSamples,ClusterExperiment-method Man page
orderSamples<- Man page
orderSamples<-,ClusterExperiment,numeric-method Man page
pamClassify Source code
pamCluster Source code
pca Source code
plotBarplot Man page
plotBarplot,ClusterExperiment,character-method Man page
plotBarplot,ClusterExperiment,missing-method Man page Man page
plotBarplot,ClusterExperiment,numeric-method Man page
plotBarplot,matrix,missing-method Man page
plotBarplot,vector,missing-method Man page
plotClusters Man page
plotClusters,ClusterExperiment,character-method Man page
plotClusters,ClusterExperiment,missing-method Man page
plotClusters,ClusterExperiment,numeric-method Man page
plotClusters,matrix,missing-method Man page
plotClustersInternal Source code
plotCoClustering Man page
plotCoClustering,ClusterExperiment-method Man page
plotDendro Source code
plotDendrogram Man page
plotDendrogram,ClusterExperiment-method Man page
plotHeatmap Man page
plotHeatmap,ClusterExperiment-method Man page
plotHeatmap,ExpressionSet-method Man page
plotHeatmap,SummarizedExperiment-method Man page
plotHeatmap,data.frame-method Man page
plotHeatmap,matrix-method Man page
plottingFunctions Man page Man page
postClusterMany Source code
postProcessClusterK Source code
primaryCluster Man page
primaryCluster,ClusterExperiment-method Man page
primaryClusterIndex Man page
primaryClusterIndex,ClusterExperiment-method Man page
primaryClusterIndex<- Man page
primaryClusterIndex<-,ClusterExperiment,numeric-method Man page
primaryClusterNamed Man page
primaryClusterNamed,ClusterExperiment-method Man page
pullSampleData Source code
removeClusters Man page
removeClusters,ClusterExperiment,character-method Man page
removeClusters,ClusterExperiment,numeric-method Man page
removeUnclustered Man page
removeUnclustered,ClusterExperiment-method Man page
requiredArgs Man page
requiredArgs,ClusterFunction-method Man page
requiredArgs,character-method Man page Man page
requiredArgs,factor-method Man page
seqCluster Man page Source code
seqPal1 Man page
seqPal2 Man page
seqPal3 Man page
seqPal4 Man page
seqPal5 Man page
setBreaks Man page Source code
setClusterColors Source code
setToCurrent Man page
setToCurrent,ClusterExperiment-method Man page
setToFinal Man page
setToFinal,ClusterExperiment-method Man page
show,ClusterExperiment-method Man page
showBigPalette Man page Source code
showHeatmapPalettes Man page Source code
simCount Man page
simData Man page
speccCluster Source code
subsampleClustering Man page
subsampleClustering,ClusterFunction-method Man page
subsampleClustering,character-method Man page
testContrasts Source code
tightCluster Source code
transData Source code
transform Man page
transform,ClusterExperiment-method Man page
transformation Man page
transformation,ClusterExperiment-method Man page
transformation<- Man page
transformation<-,ClusterExperiment,function-method Man page
trueCluster Man page
unnameClusterSlots Source code
updateCurrentWorkflow Source code
workflowClusterDetails Man page
workflowClusterDetails,ClusterExperiment-method Man page
workflowClusterTable Man page
workflowClusterTable,ClusterExperiment-method Man page
workflowClusters Man page
workflowClusters,ClusterExperiment-method Man page
wrongArgsWarning Source code
Bioconductor-mirror/clusterExperiment documentation built on Aug. 2, 2017, 4:28 p.m.